| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YPK_0410 |
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| Symbol | |
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| ID | 6091194 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Yersinia pseudotuberculosis YPIII |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010465 |
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| Strand | + |
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| Start bp | 448646 |
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| End bp | 452215 |
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| Gene Length | 3570 bp |
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| Protein Length | 1189 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 641595474 |
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| Product | YD repeat-containing protein |
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| Protein accession | YP_001719168 |
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| Protein GI | 170022663 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3209] Rhs family protein |
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| TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGTCTCCG GCGATTACCT TCAGGTCTGG CCCGTGATTG ATATTGCCGG TGTTTTGCCT
GTCCGGTTAC AGCGTACTTA TCGTTCCGGC GATTATTTCA CGGTCTCGGG TTGCTTTGGT
CATAAATGGG CGGATAGCTG GTCACAACAC TTGGTCGTGC ACGAAGACAA CATTGATTAC
ATTGACGAGG AAGGGGTGGG GCTGAGCTTC TTTACGCCAG AGAATAAAGT CCAGGCCGTC
AATCTGTATA ACCTGCGTTA TGAGTTAGTG GGGGAGCGTC ATGGCGAACT CAGGGTTTTT
GACCGGTCAA CTCAGCAGAC ACTGCATTTT AATCAACAGC AACAGCAGCA GCGTTATTTA
TCGGCTATCA CCGACCACAA AGGGAACCGA ATCGATTTTC GTTACCAACA GGGGGAACTG
ATATCGGTCG AGCACAGTGA CGGCTATGTG CTGGAGATCG ACAGCCGTGG CAGGACAATA
CACGCGGTCG AGCTTGTCAC GCAGGAGAAA AGACAAAAGC TGTTGCAGAG TACATTCAGT
GAGCGCGGTT ACCTCGTTCA GTGCCAGAGT TTCCAGTATG GCACGCTGTC GCATGAATAT
GATCCGAAGG GGTATATGGT GCGCTGGCGG GATACGGATA GCACGGATGT GGCTGTCCGT
TATGATATTT CAGGGCGGGT GGTGGCACTA AAAACATCGA CCGGTTTTTT TGCTGACCAT
TTTATTTATC ATGACAAAGA ACGCTATACG ATCTATCGCG ATGGGGAAGG GGGAGAAACC
GGTTATTACT ATAATGAAAA CAATCTGCTG ATAAAGTTAG TCGATCCGTT AGGCAATATC
ACCCTCACCG ACTGGGACTT GACCCAGAAA ATAAAAGAAA CCGATGCATT AGGGCGTATC
ACCCGGTTTA TTTACAATGA GCGCGGTGAT TTAACCGCCG TGATCCACCC GGATGAAACC
CGTACCGAAT ATGAGTATAA CCCGTCTGGT GTGGTCACTG CGTTTACGTC TTCGGCGGGG
GATAGCTGGC AATATCAGTA TGACAGGCAG GGATTGTTAC GACAGGTAAC TTATCCTTCT
GGCCAGACGA TGTCGTTTCG CTACGGCAAG AAGGGGGAAG TGCTGCGCAA GATCATCGCG
GAAGATCAGG TGTGGCGTTA CCACTATGAT CACCACGGTT GTTTAACCAC CATTATCGAT
CCGAAGGGGA ACAGTACAGC CGTCACACTG GATGTGCTGG GGCGGTTATT TTCTCACCAA
AACGCCCTCG GGGAGCTCAC CCGTTACACA CACAGTGACG CGCATGCCAG TCCGGCGGGC
AGCGTCACAA AAATGGTCAT GCCGGATGGT GTGGAGCAGG CCATTGCCTA TGACAGCGAG
AAGCGTATTG CCGCGCTGAC CGATGGCGCG GGGAAAACCA CCCGTTACGA ATACGGCGGT
TTTGATTTAC TGACCGGCCT GATACGCCCG GACGGGCAGC GGCTGACCTT CGGCTATGAC
ACACTGACGC GCCTGAATCA GGTGACCAAT GCGTCAGGTG ACACCTATCG TTATACCCGT
GATCGGGCCG GGCAGGTGAT CAGCGAAACC GATTTTACCG GGCGCACGGT TCATTATCAG
TATGATGCGG TGGGGCGGCG TATCGGGGCG CGTTACCCGG ATCAGCGCCT TGTTCGCTGG
CACTACTCGA TGCAGGATCA GGTGCTGGCG CAGCAGACCT GGCACTGTGA TGCACTGAGT
TCCACGCTGG TTGGCACGGT CAGCTACGGT TATGACCGTG CCGGTCGTTT ACTGAGCGCG
ACCAATGCGG ATGCGGTGGT GGAGTTTGAT TACGACGAGG CGGGTCAGTT GGTTGCGGAG
CGGCTGAATG GCCGGGAGGT GCGGCATCAG TGGGATGCGC TAAACGGCAC CCCTGTTGCC
CGACAGGTGG GTGAGCTGGG GCTGACGTTT GTGTACGGCG CACAGGGCGA ACTGACCCGG
CTACAGCTGG CGGGCCATCA GCCCCTGGCG TTGCAGCATG ACCGGTTGGG GCGAGAGACG
GTACGTGAAA GCGCGGCCGG GTTTATTCAG GCCTGCAATT ATACCCCGAG CGGGCTGTTG
GCCCATCAGG CGGCCGGGCG TAACTCGGCA TTATTCCAGC AACAGTTGAT CGCCCCGGAG
AGCCCGGCCT TGCACGGCAG TGCGGTCAAC CGCAGTTGGC AGTATGACCG GGCTTATAAC
GTGGTGGGGA TGGATGACGG GCGTTGGGGT AAAACGCAGT ACCAATATGA CCGCAATGAC
CAGGTCGTCC GCGCTGATTT TGGTGGTTTT TTGCCGTTGC AGGAGCAGTT TAGCTACGAT
GTGAACCAGA ACCTGCGCGA GCATCGCTGT TTACCGCGTG GGGCACAGGC GGTTTTGGCG
CAGGCGAGCC AGCAACAGCA GGCGGGCCGG GTGGTGAAGC GCGGTGACAG TGAGTACCGT
TACGATGCTG CCGGGCGACT GGTGGAGAAA CGCAGCCAAA AAGACGGCTA CCGGCCACAG
CTGTGGCGTT ATCGCTGGAA TGAGCAGGAC CAGTTATCCG AATTGATCAC GCCGACGGGG
GCGCGCTGGC GCTACGGTTA TGATGCCTTT GGGCGACGTA TTCGAAAACT GCGGGTAGTG
GATACCCCGC CGCTCAATGA GATGGACGCT CCTTCCACCG GTCCGGCCAC GGCATCACTG
GCCGGTTACG CGTACCTGTG GAGCGGCGAC CAGTTAATCG AAGAGGTGCC GGTGTATGCC
GACGGCACGG TGGCGTATGA GCAGGGGATC CACTGGCTGT ATGCGCCGGG CGGATTAACG
CCGATGGCGC GCTACGCGCA AGGCAAACTG CATTATGTGG TGGCGGATCA TCTGGGTACG
CCGCGGGAGT TGTTGAATGA GCAGGGCAAG GTGGTGTGGG CGAGCCGTCT GAGCACGTGG
GGGCAGGCGG AATTATGGCG ACAGGCGGCG AATGAGGAGG ATCGGGTCAG CTGTAACCTG
CGTTTTGCGG GTCAGTACGC GGATGCAGAA TCCGGGTTGC ATTACAACCG GTTCCGCTAC
TATGATGGCG AGACGGGGCA ATATCTATGC CCGGACCCGA TAGGGCTGGA AGGGGGATTA
AACCCGTACG GGTATGTACA TAATCCGGTG AGTTGGGTGG ATCCGCTGGG GCTGGCAACA
TGTCCTCCTC ATCCATATCA AGGTGTTAGA GATGCATCAG AATATCTGAG ATCACAAAAT
GTGCCTCGTG ATTTTAGAAA GCAAATAATC CAGTCTTTCG ATATAGAAAC AATCAAGGTA
CGCCCTGCAA CATCGAATGA ATATGGGCTA AGGTACTTTG ATAATGTTAA TGCATTGGAG
AAAGGAAGAT ATATATTTGA AACATTTCCT GCAACCAGAT CTAGTTTGGC GGTTAAAACC
GAATGGAACC AAATGACTTA TTTTTCACAA TTTAAAGTCA CTCCAGGTGT TACCATCATT
GAAGGAAAGG CTGCTGCTCA AGGTGTTGGC TTACCTGGCG GTCAGATACA AAAATACATT
AGTAACTTGG ATAAGTTAAC AAAACAATGA
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| Protein sequence | MVSGDYLQVW PVIDIAGVLP VRLQRTYRSG DYFTVSGCFG HKWADSWSQH LVVHEDNIDY
IDEEGVGLSF FTPENKVQAV NLYNLRYELV GERHGELRVF DRSTQQTLHF NQQQQQQRYL
SAITDHKGNR IDFRYQQGEL ISVEHSDGYV LEIDSRGRTI HAVELVTQEK RQKLLQSTFS
ERGYLVQCQS FQYGTLSHEY DPKGYMVRWR DTDSTDVAVR YDISGRVVAL KTSTGFFADH
FIYHDKERYT IYRDGEGGET GYYYNENNLL IKLVDPLGNI TLTDWDLTQK IKETDALGRI
TRFIYNERGD LTAVIHPDET RTEYEYNPSG VVTAFTSSAG DSWQYQYDRQ GLLRQVTYPS
GQTMSFRYGK KGEVLRKIIA EDQVWRYHYD HHGCLTTIID PKGNSTAVTL DVLGRLFSHQ
NALGELTRYT HSDAHASPAG SVTKMVMPDG VEQAIAYDSE KRIAALTDGA GKTTRYEYGG
FDLLTGLIRP DGQRLTFGYD TLTRLNQVTN ASGDTYRYTR DRAGQVISET DFTGRTVHYQ
YDAVGRRIGA RYPDQRLVRW HYSMQDQVLA QQTWHCDALS STLVGTVSYG YDRAGRLLSA
TNADAVVEFD YDEAGQLVAE RLNGREVRHQ WDALNGTPVA RQVGELGLTF VYGAQGELTR
LQLAGHQPLA LQHDRLGRET VRESAAGFIQ ACNYTPSGLL AHQAAGRNSA LFQQQLIAPE
SPALHGSAVN RSWQYDRAYN VVGMDDGRWG KTQYQYDRND QVVRADFGGF LPLQEQFSYD
VNQNLREHRC LPRGAQAVLA QASQQQQAGR VVKRGDSEYR YDAAGRLVEK RSQKDGYRPQ
LWRYRWNEQD QLSELITPTG ARWRYGYDAF GRRIRKLRVV DTPPLNEMDA PSTGPATASL
AGYAYLWSGD QLIEEVPVYA DGTVAYEQGI HWLYAPGGLT PMARYAQGKL HYVVADHLGT
PRELLNEQGK VVWASRLSTW GQAELWRQAA NEEDRVSCNL RFAGQYADAE SGLHYNRFRY
YDGETGQYLC PDPIGLEGGL NPYGYVHNPV SWVDPLGLAT CPPHPYQGVR DASEYLRSQN
VPRDFRKQII QSFDIETIKV RPATSNEYGL RYFDNVNALE KGRYIFETFP ATRSSLAVKT
EWNQMTYFSQ FKVTPGVTII EGKAAAQGVG LPGGQIQKYI SNLDKLTKQ
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