Gene YPK_0230 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagYPK_0230 
Symbol 
ID6090575 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameYersinia pseudotuberculosis YPIII 
KingdomBacteria 
Replicon accessionNC_010465 
Strand
Start bp268234 
End bp268932 
Gene Length699 bp 
Protein Length232 aa 
Translation table11 
GC content52% 
IMG OID641595290 
Productphosphoglycolate phosphatase 
Protein accessionYP_001718996 
Protein GI170022491 
COG category[R] General function prediction only 
COG ID[COG0546] Predicted phosphatases 
TIGRFAM ID[TIGR01449] 2-phosphoglycolate phosphatase, prokaryotic
[TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
[TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.135549 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGTTAAGT TTAAAGCGAT TCGTGGTGTT GCATTCGATC TGGATGGCAC ATTAGTCGAC 
AGCGCGCCTG GTCTGGCCCG TGCAATTGAT ATGGCGTTGG CGCATCAGGG GTTGCCTGCC
GCTGGTGAAG CGTTAGTCTC CACTTGGATT GGTAATGGCG CAGATGTCTT AGTCGAGCGC
GCGTTGCATT GGGCAGGGCG TGAACATAAT GCTCAGCTTG TGGCACAGAC CCGCGAGCTG
TTTGATCACT ATTATGCCAA AACCGTTGAG CAGGGGAGCC AGTTATTCCC GCAAGTGAAA
GCCACTTTAG CTCAATTGGC TGCCAATGGT TTGCCAATAG GCCTCATTAC CAATAAGCCA
ACACCGTTTG TTGCCCCTTT ACTAACGTCA TTGGGGATCT CAGACTATTT CTCAGTCATC
ATTGGGGGCG ATGATGTGGT GGTGAAGAAA CCGCATCCGG CCCCGTTGTA TTTATTGCTG
GGAAAACTTG GCTTACATGC CCGTGAAATG CTGTTTGTCG GTGACTCGCG TAATGACATT
ATGGCCGCAC AGGCGGCGGG TTGCCCTTGT ATTGGGCTGA CCTATGGATA TAACTACGGT
GAAGCGATTG CCACCAGTCA TCCAGACTGC GTGCTGGCGC ATTTTGCCGA CCTGTTGCCC
GCCATTGGGC TACCATCTTT AAAAGATCAG GAAGTATAA
 
Protein sequence
MVKFKAIRGV AFDLDGTLVD SAPGLARAID MALAHQGLPA AGEALVSTWI GNGADVLVER 
ALHWAGREHN AQLVAQTREL FDHYYAKTVE QGSQLFPQVK ATLAQLAANG LPIGLITNKP
TPFVAPLLTS LGISDYFSVI IGGDDVVVKK PHPAPLYLLL GKLGLHAREM LFVGDSRNDI
MAAQAAGCPC IGLTYGYNYG EAIATSHPDC VLAHFADLLP AIGLPSLKDQ EV