Gene YPK_0113 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagYPK_0113 
Symbol 
ID6088457 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameYersinia pseudotuberculosis YPIII 
KingdomBacteria 
Replicon accessionNC_010465 
Strand
Start bp134940 
End bp136067 
Gene Length1128 bp 
Protein Length375 aa 
Translation table11 
GC content48% 
IMG OID641595173 
Producttranscriptional regulator, CdaR 
Protein accessionYP_001718879 
Protein GI170022374 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG3835] Sugar diacid utilization regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCCAACCA GCTATCTTAA GGAAGACACC GCTCGCCAAA TCGTTCAGCG CGCCATGAGC 
ATTATTGATT ACTCGGTTAA TGTCATGAAT GAACACGGCG TCATTATTGC GTCTGGTGAT
CCTCGCCGTT TACATCAGCG TCATGAAGGT GCCGTTTTAG CGCTGACGGA AAACCGGATG
GTCATGATCG ACGAAGCCGT GGCTGGCAGG CTTAAAGGCG TTAAACCAGG AATTAACCTG
CCGATTATTT TTCGTCAGCG GATGGTGGGC GTTATTGGGA TTTCGGGTGA ACCCGATAAA
GTGCAGGCCT ATGCTGAACT GGTGCGCATG GCGGCCGAGC TGATTTTAGA ACAAGCTGAA
ATGTTAGAGC AAAATCAGTG GGAAAAACGC TATCGCGAAC AGTTAACCTC TCAGCTCATT
GCCCAGCAAG GCAGTGCGGC TTCAGTGGCA TCAATGGCGG CCTATTTAGG ATTAGACCTC
ACACTGCCAC GCATTGCGCT GATCGTCAGT CTGCGTGAAC AAGAGCACGC TCATCAGCGG
GATCTGGTCG AAATATTAAG CAACCACAGC CGTGAAACAT TGGTCACTTT ACATGGGTTT
GAGCGGGTTG TGGTGTTATT GCCGCTGAAC CTTGCACACA GTGACGATCG TGAAGTGACG
GCCAGAAAGG CTTTGCGCAA ATTGTATGCG CTGCTACAGC CGCGTTTTAG TCTGAATATG
TATGTTGGTG GCATTTTTGA TGGCCTGGAT GGGCTGCAAC GCTCCTATCT TAGCGCACAA
GCGATGCAAG AAACGGCATT GCGACAAAAG CTCACGCAAC CGGTCATGTT CTATCAAGAC
CATTTTTTGA CCGTTCTTCT GAATGATTTT GCCGGGAGTT GGCAGGCTGG TGAACTGAGC
TCTGCCTGGC AAACACTGCG TCAGGCGGAT AGCAAAGACG TTCTGTGTCA CACTCTGCGT
TGTTACTTTG TACAGAATTG TGATCTGTCT CAAACGTCAA AACAACTGCA TATCCATGTC
AATACCCTAC GCTATCGGTT ACAGAAGATC GAAGCTATAA CAGCTTTAAA AATCAATGAA
TTAAATTCAA TTCTTCAGCT CTATATTGGC ATGAAAATAG AGAGCTAA
 
Protein sequence
MPTSYLKEDT ARQIVQRAMS IIDYSVNVMN EHGVIIASGD PRRLHQRHEG AVLALTENRM 
VMIDEAVAGR LKGVKPGINL PIIFRQRMVG VIGISGEPDK VQAYAELVRM AAELILEQAE
MLEQNQWEKR YREQLTSQLI AQQGSAASVA SMAAYLGLDL TLPRIALIVS LREQEHAHQR
DLVEILSNHS RETLVTLHGF ERVVVLLPLN LAHSDDREVT ARKALRKLYA LLQPRFSLNM
YVGGIFDGLD GLQRSYLSAQ AMQETALRQK LTQPVMFYQD HFLTVLLNDF AGSWQAGELS
SAWQTLRQAD SKDVLCHTLR CYFVQNCDLS QTSKQLHIHV NTLRYRLQKI EAITALKINE
LNSILQLYIG MKIES