| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YPK_0107 |
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| Symbol | |
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| ID | 6091212 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Yersinia pseudotuberculosis YPIII |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010465 |
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| Strand | + |
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| Start bp | 126853 |
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| End bp | 130065 |
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| Gene Length | 3213 bp |
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| Protein Length | 1070 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 641595167 |
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| Product | outer membrane autotransporter |
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| Protein accession | YP_001718873 |
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| Protein GI | 170022368 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3468] Type V secretory pathway, adhesin AidA |
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| TIGRFAM ID | [TIGR01414] outer membrane autotransporter barrel domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAAAAA ACCGCTCTAC GCTTTCCCCG TGCTTTCGTA AAACACTGAT AGCCAGTTTG
CTGGTGCCTC TTTGCAGCCC CCTGTATAGC TGGGCGGTAC AAACGGCCAG CATAACGGAT
GGCAGCACGA TGGTTATCTC TGGGGGTTAT GACACTGAGG CTAATAACCA GACGGCAGTA
TTTGTGCAAG GTTCCGGTAG CACTATTAAT GGTGGCTCCG ATGTCGTTAT TGAAACCACG
GGTGTTGGTG CAATTGGTGC CAATGCCTCT GAAGGTGGGA CGCTGGGTCT GACGGGTTCG
ACTATCAAGA CCGAGAATAG TGTGGCTTTT GGTGTCTTAA ATGACAAAGG TACGGTGAAT
TTACAGGGTG GTACGATTAC CACGAAAGGT CAGACGGCAT ATGGCGTGTA TTCCTCTGGT
CTGGGCAGTA ATACCGATAT TCACAGTTCG GAGATCACGA CCAGCTACTC GTTAACCCAC
GCTATTTATG GTGCGGGCGG GACGGGATTG ACATTGAACA ATACCACCCT CAATACCAGT
GGCAGTGGTA GCTATGGCAT TTATCTGAAT GGCCCCGGAG GGAGCTTAAC GGGTGCGGAT
AATACCATTA ATAGTACTCA TGCGACCAAT GGTGCGGGTA TCTATATTTC ATCGGGTGGC
TCAAATGCGA CTTTAGATAA CACCACACTG AATATCACTA AAGGTGCTGT TGGTGTGAAT
GTGGGGGAGG GATCCTCTAT TACGATGGAT GGCCTTATTG CCACCGGTAA TATCACCAAC
CTATTTAAAG TGAACGGGAA TGCCTCGGTC AGTAATGCCA ATATCGAATT AGCCGCGGGT
GGCTTATTAA TGGCACAGGG CCACAGTGCA TCCAATCAAG CGGTCATCAT ATTAAATAAT
GTCGATGCTA TTTCTAACGG CGGCGGCACG ACACTGGTTG ATGTTAATAA GGACGCTGAC
GTCACCATTA ATGGGGGGGC TTACCACTCA AAAGGTAACA ATGCGAAGGG AATCTGGGTT
CGAGATAATA ACTCATCGCT GAATGTCGAT AACGTCGTGA TTATCACCGA GGGCGTGAAT
GCAACGGCGA TTGAAAATCG TGGCACCGCT ATCGTAAAAA ATACCACGGT GATAACCCAA
GGGAATAACT CTCACGGCCT CTACTCTGAG CAGAGCCTTG ATGCCACCAA TATGGCAATT
TCCACTGCGG GGATTGGCAG TATTGGGGCG GCGGCAGCTA AAGGCGGTAA CCTAAATCTG
AATGATGCCC TCATCGAGAC GACGGGTAAT TCAGGTATGG TGCTGGGTAC TTTTGCCGAC
TCATCCATCA GCGCTAAAAA TATTACAGGT CTATCGACCG GCGCTGGTGC TTATGCCTTG
TGGGTAGATG ATGGTAGCTC AATTCTTCTG GAAGAGAGTC AAATTACCAC TCAAGGCCAG
GGCGCAGGAG GGATTTATGC CTCAAATACA GGGACTGGCT CTCACACCGC TTACACTCAG
GTTACGCTGA ACAACTCGCA GATTCATAGT GAGCAGGGGC CGGGCATCTG GGCTAATGGT
GCTGACATTA ATGTTGATGT GAAGAATGGT TCGCAGTTAA CGGGAGGGAA TGGGTTATTG
ATCTACGCCT CGAGTAATGC AGGGGCTGCC AGTAATGTCA ATGTGAATGG CGATAACCAC
GCCGTCCTGT TGGGTGATAT TCACGCCGCA GAAAACAGCA ATATTAACCT GGCACTGAAT
AATAATTCCG TTTGGACGGG TGCGGCGACT AACGCCAAAC AGGTTGATAT CGACAGCAGC
AGTATCTGGA ATTTAACGGG TGATGCAGAT GTTGAGTCAA TGCATGTATT GGGCCAGATG
AACTTTATCT CAAATAGCAG TGACACCAAT TCACGAGCCC CCTACGATAA TTTCAGTACC
TTAACGATCA ACAGTAATGT CACCGGGAGT GGCAGTTTTA CCTTTAATGT GCAATTGGGT
GATAACGACT CGCCAGTGGA TAGACTCTAT GTAATAGGTA ATGCCTCTGG TGACCATGGG
GTTCAGGTTA TTAACCAAGG CGGTTTGGGT GCGTTGACCA CGGGTGACGG GATTAACCTG
ATTACCGTTG ATGGGGAGAC CCATTCTGGC TCATTTACTA TGAGCAACTC GGTGAGCGCA
GGGGCCTATG AGTATTTTTT GTATAAGATA GATGACTACC GTTGGAATCT GCAATCTAAT
CTCATCAATC CCGGTCCTGG TCCTGAACCA GAAATTGAAC CAGAAGAGAT AGCTTACCGC
CCTGAAGTTC CTGGCTATAT TGCCGCACCT TGGTTAAATG CATTTTATGG TTTTACTACT
TTGGGTAGCT TGCACGAACG CCGTGGCTCG GCCGAGGGGG CAGCCGAAGG GTTTAATCAA
GACTCATGGG GCCGTATCCG TGGGCAGCAT AATAATTTTG AGGCGGGCCG TTTTAGCTAC
GATTCAAATA TCTGGTTTAT GCAATTGGGT CATGATGTCT ATCAGGCCAA AAATGCCGCA
GGCACGCAAG TGACTGGCGG TATGATGATC ACCCTAGGTA AGCAGAATAG CGATACACGG
GATCGGGCGC GGGCGATAAA TCCGGATTTG TCGATCGATA CCGGCAAGAT CAAAACCGAG
GCTTATGGGT TTGGGGGTTA TTACACCCTG ATGACCGAGG AAGGCGGTTA CCTTGATATC
GTTAGCCAGG CGACGCTATA CCGCAACAAC TATGAGAGCC AACATAATAC CAAGCATAAT
GGCTACGGTG TTGTGATGTC TGCCGAAGTG GGTCAGCCGT ATCCACTGGC TGCTGGCTGG
GTAGTGGAGC CTCAGGGGCA GCTAAAATAT CAATACCTGC ACCTGAGTCC GAAGAATTTC
AACGATGCCA TTTCAGAGAT CGGGGGGACG GATTACTCTG TTGGTCAGGT ACGTGCCGGG
CTGCGTCTGT TCAGTGACGC GAGTGAGAAG CGAGATATTA AGCCTTATCT GACCACCGAT
GTGCTTCACC AGTTGGGCCG AAACCCACAG GTGACGGTAG CGACGGTGGA TATCCGTCCT
GACTTCACAA AAACCTTCTG GCAGGGGGGC GCAGGGGTGA CCGCTAAAGT GAATAGTCAG
GTTGATCTCT ATGCTGATGC GAAATACCAA AAATCTTTTG ATGGCAAATT AGATGGCTAC
TTAGGTAATT TGGGCGTGAA AGTCAGTTTC TGA
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| Protein sequence | MKKNRSTLSP CFRKTLIASL LVPLCSPLYS WAVQTASITD GSTMVISGGY DTEANNQTAV
FVQGSGSTIN GGSDVVIETT GVGAIGANAS EGGTLGLTGS TIKTENSVAF GVLNDKGTVN
LQGGTITTKG QTAYGVYSSG LGSNTDIHSS EITTSYSLTH AIYGAGGTGL TLNNTTLNTS
GSGSYGIYLN GPGGSLTGAD NTINSTHATN GAGIYISSGG SNATLDNTTL NITKGAVGVN
VGEGSSITMD GLIATGNITN LFKVNGNASV SNANIELAAG GLLMAQGHSA SNQAVIILNN
VDAISNGGGT TLVDVNKDAD VTINGGAYHS KGNNAKGIWV RDNNSSLNVD NVVIITEGVN
ATAIENRGTA IVKNTTVITQ GNNSHGLYSE QSLDATNMAI STAGIGSIGA AAAKGGNLNL
NDALIETTGN SGMVLGTFAD SSISAKNITG LSTGAGAYAL WVDDGSSILL EESQITTQGQ
GAGGIYASNT GTGSHTAYTQ VTLNNSQIHS EQGPGIWANG ADINVDVKNG SQLTGGNGLL
IYASSNAGAA SNVNVNGDNH AVLLGDIHAA ENSNINLALN NNSVWTGAAT NAKQVDIDSS
SIWNLTGDAD VESMHVLGQM NFISNSSDTN SRAPYDNFST LTINSNVTGS GSFTFNVQLG
DNDSPVDRLY VIGNASGDHG VQVINQGGLG ALTTGDGINL ITVDGETHSG SFTMSNSVSA
GAYEYFLYKI DDYRWNLQSN LINPGPGPEP EIEPEEIAYR PEVPGYIAAP WLNAFYGFTT
LGSLHERRGS AEGAAEGFNQ DSWGRIRGQH NNFEAGRFSY DSNIWFMQLG HDVYQAKNAA
GTQVTGGMMI TLGKQNSDTR DRARAINPDL SIDTGKIKTE AYGFGGYYTL MTEEGGYLDI
VSQATLYRNN YESQHNTKHN GYGVVMSAEV GQPYPLAAGW VVEPQGQLKY QYLHLSPKNF
NDAISEIGGT DYSVGQVRAG LRLFSDASEK RDIKPYLTTD VLHQLGRNPQ VTVATVDIRP
DFTKTFWQGG AGVTAKVNSQ VDLYADAKYQ KSFDGKLDGY LGNLGVKVSF
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