Gene YPK_0092 details

Gene Information

• Locus tag: YPK_0092
• Symbol: dppF
• ID: 6091140
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Yersinia pseudotuberculosis YPIII
• Kingdom: Bacteria
• Replicon accession: NC_010465
• Strand: +
• Start bp: 106915
• End bp: 107991
• Gene Length: 1077 bp
• Protein Length: 358 aa
• Translation table: 11
• GC content: 49%
• IMG OID: 641595152
• Product: dipeptide transporter ATP-binding subunit
• Protein accession: YP_001718858
• Protein GI: 170022353
• COG category: [E] Amino acid transport and metabolism
• COG ID: [COG4608] ABC-type oligopeptide transport system, ATPase component
• TIGRFAM ID: [TIGR01727] oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain

Plasmid Coverage information

• Num covering plasmid clones: 23
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAATTCGA ACACTGAAGC GGCGCATAAA GTAAACATGA TGGGTGAAAC CGAAATAAAG 
GGAGAAAGTT TGCCAGCAGA GACGGGTAAA AAGCCGTTAT TACAGGCGAT CGATCTGAAA 
AAATACTACC CGGTGAAAAA GGGTTTCTTT ACACCAGAAC GTTTGGTTAA AGCACTGGAT 
GGCGTTTCAT TCACATTGGA GCGGGGCAAA ACATTGGCGG TAGTGGGTGA ATCAGGTTGT 
GGTAAATCCA CTCTGGGCCG TTTACTGACG ATGATAGAGA TCCCTACCGG CGGCGAACTA 
TACTATCAAG GGCAGGATCT GCTCAAGCCC GATGAAAGTG CGGAAAAACT GCGACGCCAG 
AAGATTCAGA TTGTCTTCCA GAACCCCTAC GGTTCGCTGA ATCCACGTAA GAAGGTGGGG 
CAGATTTTGG AAGAGCCATT GCAGATCAAT ACCCAGCTCA ATCGCAAGGA GCGCCGCGAA 
AAAACCTTGG CAATGATGGC GAAAGTGGGC CTGAAAACTG AACATTATGA TCGCTATCCT 
CATATGTTTT CCGGTGGTCA GCGTCAACGG ATCGCCATTG CCCGTGGATT GATGTTAAAC 
CCTGATGTGG TGATTGCCGA TGAGCCGGTA TCTGCGCTGG ATGTCTCCGT GCGGGCGCAG 
GTACTGAACC TGATGATGGA TTTACAGCAG GAATTGGGGC TGTCATATGT GTTTATTTCC 
CATGACCTGT CGGTGGTTGA ACATATTGCT GACGACGTGA TGGTGATGTA TTTGGGGCGC 
TGCGTTGAAA AAGGCAGCAA AGAGGCTATT TTTAACAACC CCCGCCATCC TTATACGCAA 
GCATTGCTAT CAGCGACACC GCGTCTGAAC CCAGATATGC GTCGTGAGCG TATTAAATTG 
ACTGGAGAAC TACCCAGCCC AATGAATCCA CCGCCAGGTT GTGCATTCAA TGCCCGCTGT 
CGTAGAGCAT TTGGCACCTG TAGCCAGTTA CAACCGCAGC TTAAGCAGTA TGGTGACCAG 
ATGGTGGCGT GTTTTGCCGT TGATCAGGAT GAAGCAGAGA AGGTCGTTTC TGTTTGA 

 

Protein sequence

MNSNTEAAHK VNMMGETEIK GESLPAETGK KPLLQAIDLK KYYPVKKGFF TPERLVKALD 
GVSFTLERGK TLAVVGESGC GKSTLGRLLT MIEIPTGGEL YYQGQDLLKP DESAEKLRRQ 
KIQIVFQNPY GSLNPRKKVG QILEEPLQIN TQLNRKERRE KTLAMMAKVG LKTEHYDRYP 
HMFSGGQRQR IAIARGLMLN PDVVIADEPV SALDVSVRAQ VLNLMMDLQQ ELGLSYVFIS 
HDLSVVEHIA DDVMVMYLGR CVEKGSKEAI FNNPRHPYTQ ALLSATPRLN PDMRRERIKL 
TGELPSPMNP PPGCAFNARC RRAFGTCSQL QPQLKQYGDQ MVACFAVDQD EAEKVVSV