Gene Daud_1818 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDaud_1818 
Symbol 
ID6025929 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCandidatus Desulforudis audaxviator MP104C 
KingdomBacteria 
Replicon accessionNC_010424 
Strand- 
Start bp1922303 
End bp1923274 
Gene Length972 bp 
Protein Length323 aa 
Translation table11 
GC content55% 
IMG OID641594635 
ProductCRISPR-associated RAMP Cmr6 family protein 
Protein accessionYP_001717946 
Protein GI169831964 
COG category[L] Replication, recombination and repair 
COG ID[COG1604] Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily) 
TIGRFAM ID[TIGR01898] CRISPR-associated RAMP protein, Cmr6 family 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.162869 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGCACGA GGCGGACTTG CCTTGTCAGC GCGCGAAAAA CGCCGACGAC GAACGCCGGG 
CTTTGGCTGG ACAAATTCAT CCGCAATCAG GCTAGAGAGG ATAAGGATAG CCGCCATGAT 
CTAGTGCGAG AGGTATCTGA TATACCGGTG CCGGAGGAGT ACTCACGCTG GTTTGAGCGT 
TGGCGGCGGG TATTACAAGA TTATGGAGCC GCATGCAGGG TGGCCGAGGT TTTAGGGCGC 
ATAGCCGTGG GCTTGGGCGA AGAGAGCGTC CTGGAAACAT CGGTTGCATT GCACCATACC 
TATGGCGTGC CCTACATTCC CGGTAGTGCC CTCAAAGGAC TGGCCGCCAG CTTTGCCCGT 
CAGTATTTAG GGGATGATTG GCAGGCGAAC GCCGGGGCAT ATAAGACAGT TTTTGGCGAT 
ACCGATACCG CAGGCTACGT CATTTTTTTC GATGCGCTGC CCCTGCCTGG TTCCAGGCTT 
TTATACCCCG ATGTGATTAC TGTCCATCAT GAAGGGTACT ACCAAAAAGG GGACAAGCCT 
CCGGCGGATT GGGACAGTCC GAACCCGGTC CCGTTCCTGT CGGCCACGGG CAAATATCTG 
GTGGCGTTAG CAGGGCCAGA TGCCTGGGTA AAGGCGGCGT TCGAGATTTT ACAGTACGCC 
CTCCTTAACT TGGGCGTAGG AGCGAAAACC TCCAGCGGCT ACGGACGATT GAGGTTGGAG 
TCAGTTCCTC CCATTACCGG CGTAGAGGAC AGAAAGGTTG ATCAGTTAAT TAACCAGATC 
CGGGCGTTGA GGACTTCGGA AGTTGCAGGA CGCATTCAGG CCTTTTATGA ACAGTGGTGG 
AAGCTTGATG TTAGCCCGGA GCATAAACGC CGTATAGCAG AGGCCATTGT GGCCAAGGTG 
AAGGAAGCCG GACGTGAGAA GCAGTCACTG GACAAAGACT GGTACAGAGA GTTGCTGGAG 
AGCCTTCGTT AA
 
Protein sequence
MSTRRTCLVS ARKTPTTNAG LWLDKFIRNQ AREDKDSRHD LVREVSDIPV PEEYSRWFER 
WRRVLQDYGA ACRVAEVLGR IAVGLGEESV LETSVALHHT YGVPYIPGSA LKGLAASFAR 
QYLGDDWQAN AGAYKTVFGD TDTAGYVIFF DALPLPGSRL LYPDVITVHH EGYYQKGDKP 
PADWDSPNPV PFLSATGKYL VALAGPDAWV KAAFEILQYA LLNLGVGAKT SSGYGRLRLE 
SVPPITGVED RKVDQLINQI RALRTSEVAG RIQAFYEQWW KLDVSPEHKR RIAEAIVAKV 
KEAGREKQSL DKDWYRELLE SLR