Gene Daud_1811 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDaud_1811 
Symbol 
ID6026615 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCandidatus Desulforudis audaxviator MP104C 
KingdomBacteria 
Replicon accessionNC_010424 
Strand- 
Start bp1914303 
End bp1915298 
Gene Length996 bp 
Protein Length331 aa 
Translation table11 
GC content56% 
IMG OID641594628 
ProductCRISPR-associated Cas1 family protein 
Protein accessionYP_001717939 
Protein GI169831957 
COG category[L] Replication, recombination and repair 
COG ID[COG1518] Uncharacterized protein predicted to be involved in DNA repair 
TIGRFAM ID[TIGR00287] CRISPR-associated endonuclease Cas1
[TIGR03641] CRISPR-associated endonuclease Cas1, HMARI/TNEAP subtype 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.0537215 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGCAAAAAA CACTTTATCT CTTCGCGAGC GGGCGGCTGC GGCGTAAGGA CAATACCGTT 
TGCTTGGAAA GCGAAAACGC CACTAAATAC TTCCCGGTGG CCAGCCTGCG GGACATTTTC 
GTGTTTGGCG AACTCGACCT GAACAAGAAA CTGTTCGAGT TTATGGAAGA ACAGGAGATC 
GTCCTGCACT TTTTCGGCTA CTACGGCAAC TACGTGGGCA GTTTTTACCC GCGGGAGCAC 
TACAACTCGG GGTACGTCAT CCTGCGACAG GCTGAACACT ACCTCGATGG GGCACGCCGC 
CTGGAACTGG CGCGCCGGTT TGTGGAAGGG GCACTCGCCA ACATCCTCCA GATCCTGCGT 
TACTACCAGA ACCGGGGGAA GGAGTTGGCG GGCTCCATCG AGTCCATTTC GCGACTGCTC 
GAAGGAAGCC TGCCGGCCTG CGGCCGTGTG GAAGAACTGA TGGCCGTGGA GGGCAACGCC 
CGGGAATACT ATTACGAAAG CTTCAACGTT ATCCTGGACA AATCGCCTTT TACCATGCCC 
GGCCGCAGCA AGCGTCCGCC GACGGATCCG TTAAACGCGC TGATCAGCTT CGGCAACTCC 
CTGATCTACG CCAAGATCCT GACCGAAATC TACAAAACAC ACCTGGACCC GCGCATCGGC 
TACCTGCATT CCACTAATTT TCGCCGCTTC ACTTTGAACC TCGACCTGGC GGAGATATTC 
AAACCGGTGC TGGCCGACCG CGTGTTGTTC CACCTGTTGG GCAAAAAGAT GCTTGACCTG 
AAGGATTTCG AGCAGCAGGG CGGGGCCTAT CTCCTTAGAG AGCGGGGCCG GCGCCTGTAT 
GTCGAAACCC TGGAAGAAAA ACTGCAAAGC ACCTTTCATC ACCGGCGGCT GCGCCGCAAC 
GTGAGCTACC AGACCCTGCT CCGTTTGGAA CTCTACAAGA TTCAAAAACA CCTGATGGGC 
GAGCAGCCCT ACAAACCGTT CGTCAGTCGG TGGTAA
 
Protein sequence
MQKTLYLFAS GRLRRKDNTV CLESENATKY FPVASLRDIF VFGELDLNKK LFEFMEEQEI 
VLHFFGYYGN YVGSFYPREH YNSGYVILRQ AEHYLDGARR LELARRFVEG ALANILQILR 
YYQNRGKELA GSIESISRLL EGSLPACGRV EELMAVEGNA REYYYESFNV ILDKSPFTMP 
GRSKRPPTDP LNALISFGNS LIYAKILTEI YKTHLDPRIG YLHSTNFRRF TLNLDLAEIF 
KPVLADRVLF HLLGKKMLDL KDFEQQGGAY LLRERGRRLY VETLEEKLQS TFHHRRLRRN 
VSYQTLLRLE LYKIQKHLMG EQPYKPFVSR W