Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Daud_1728 |
Symbol | |
ID | 6026989 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Candidatus Desulforudis audaxviator MP104C |
Kingdom | Bacteria |
Replicon accession | NC_010424 |
Strand | - |
Start bp | 1819934 |
End bp | 1823449 |
Gene Length | 3516 bp |
Protein Length | 1171 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 641594547 |
Product | putative PAS/PAC sensor protein |
Protein accession | YP_001717858 |
Protein GI | 169831876 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2206] HD-GYP domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00277] uncharacterized domain HDIG |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.00367624 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGAAGACCC AAGGGGAAGT TGCGGCCTTC CGGATGGCCC TGCTCTACAC GCTCTTCGCC GGCGCCTGGA TTTTTTTCTC CGACTGGCTG CTGGCCTGGC TGGTGACTGA CCTGGCCTGG CTTGTTCGCC TGGAAACCTA CAAGGGCTGG GCCTTTGTCG CCGTCACGGC CGTGCTTTTG TACTTTGTCC TGCAACGCCG GCTTCGGGCG CTGGAAGAGG CCCACGGGGC GCGTTTGGCG GCCCAAGCTC GGGAGCGGGG ACTGGCGGAG CGCCTGCAGC ACTACCTCGC CGCCAGCCCC ACCGTCATCT ACGCCCTGAA GGTGGAAGGC GGGGCGGCGC GGCCGGTCTG GGTGAGTGAG AACATCCGGC CGCTCCTGGG CTACCCGCCG GAGGAAGCCC TGCAGCCCGG CTGGTGGGCC GCCCATTTGC ACCCGGAAGA CCGGGAGCGG GTCCTGGCCA ACCAGTCCCT TTTGTTGGAA GCGGGTTCGC TCGCGCACGA ATACCGCTTC TTCCACAAGG ATGGCCGGGT GCTCTGGGTG CGCGATGAGC TGAGAATGGT GAGCGACGCC GCCGCCCGGG ACGGGCAGGG GCAAGAAATT GTCGGCGCCT GGACCGACAT TACCGCGCTT AAGGAAAAGG AGAAAGAAAA ACAAAGGGCA GCGCGTTCCT TCCGAATGCT CAGCAGGTGT AACGAGGCCA TTGCCCTGGC GGAGGAGGAA GGTGCGCTCA CGGAAGAAAT CTGCCGTCTT CTTGTGGAGG AGGGGGGTTA CCGGATGGCC TGGGTAGGCT TTGCCGAGGA GGAGCCGGGG AAAAGGGTGC TCCCGGTGGC CCAGGCCGGG TTCGAAGCGG GGTACCTGGA GGCCATTTCC GTAACCTGGG ACGATGCCGA AACAGGGCGA GGCCCTACCG GCACCGCCAT TTCAAGCGGC CAGCCAGTAG TTTGCCGGAA CATGCTTGCG GACCCAGCCT ATGTTCCCTG GCGCAGCGAA GCTACGAGGC GCGGCTATGC CTCCTCCATC GCGCTGCCGC TTGCCGACGA AAAAGGAACG TTCGGCGCGC TGAATATCTA CGCCGCGGAG CCGGATGCTT TTGACTCAGA CGAAGTAGAC TTGCTTGGTC GGTTGGCCAA TACTTTGTCC CTGGGAATTA ATAAGCTGCG AGACCGGGGT GCGCTAAAGA AAAGCGAGAA CCGCTACCGC GGCCTCTTCG AGCGGGCCAC CGACGTCATC TTCCTGGTCG ATGCCCGGGG GCGCATCCGG GACTGCAACC CGGCCGCTTG CGCCGTGCTG GGGTATGACC GCGCGGAAAT GCTCACGAAA AACCTGCAAG ACCTGATTTC GCCTGAAGAC CTGGCGGTCG AGCCCTTACG GATCGACCAG GCGCTGGGAA AACCCCTTTC TTTCAAGCGC AAGTTTCGGC GCAAAGACGG AACCTTAATA ATCACCGAAG CCAGGGTCAC CAAGCTCGAA AGCGGGTTGC TCTTAGGCAT TGTTCGCGAC ATTACCGGAC AGGTGCGGGC GGAGGAGACA CTCAGAGAAA GCGAAAGGTT GTTGCGGGAA TCCCAGGAGT TGGCCGGGAT AGGAAACTAT GTTTTGGATA TCCCCGCGGG CACCTGGAAA AGCTCGGCCG TGCTGGCCGA TATTTTGGGA ATCAACCGGA AAGACGAGCA TTCCCTGGAA GAATGGTCTG CCGTTATCCA CCCGGACTGG CGGGAACATG TACTCCGGGC ACGCGAAGAA GCCCTGGAAA AAGGTGCGCA GTTCCGGCAG GAATACAAAA TAATCCGGAA AAGCGACGGA GAAGAGCGGT GGGTTTATCA GGCGGGCAAA ATTGAGCGCG ATGAAAAAGG GAATCCGGTC AGAATGATCG GCACCATACT GGACATCACC GCGCGCAGGG AAAATGAAGA AGAAATCCGC GCCCGCCACG CCGAACTGGC CGCCCTGTAC GAACTCTCCA CCCACATACG CGCCGCCAAA AGCAGCGCCG ACCTATTGCC CATTGTGCTG GACAATGTCC GCCGCTTGCT CCGGGCCGCC GCCGCTGCCG TCACCCTCGT CTCGCCGGAC CGGACGCGCT TTATTATCAC CTTGGGCGCG GGACTTTGGG AGGACAGCAC CGGCCGGACC TTCCCGGCGG ACCGGGGACT GTGCGGCCTC GTGCTGGATA CCGGAAAGCC CTACGTGAGC GAAGACTACG GCGCCGAGGC CCGGGCTCTT CCCCTGGAGG GCGGCGCGGA AAAGGAAATC GGCCCGGCGG CCTTCGTGCC GCTGAAATCG GAGGAGGAAC TGTTGGGCGT GCTGGCCGTC GCCAGCCGCC GGGAGCCGGG GGCCCGGACC TTCACCCCGG CCGAGATGCA CCTTTTAACC GCCGTCGGCG AGATGGTCGG CAACGCCCTG CGCCGCATGC AGCTGTACGA AGAGGCCGCG CGCCGCCTGC GCCAGACACA GGCCCTGCGC AACATCGATA TGGCCATCAC CGGCAGCCTC GACCTGCGCG TCACCTTCAG GGTCATCCTG GACGAGGTCA CCGGCCAACT GGGCGTGGAC GCCGCCGCCA TTTTGCGCCG CGACCCCTAC ACCGGGACGC TGCGCTACGA GGCCTGGCGG GGTTTTCACG CCGTAAGTCC GGAGCACCTG AGCTTGCGCT TGAACGAGGG CTACGCCGGC CGGGCGGCTC TGGAGCGGCG CGCGCTTTTC CTCCCCGACC TTCGCGAAGC CGAACCGGAT CCGGCCCAGG GGCACCTTCT CGCCGGGGAA GGTTTCGCCG CCTACTACGC CGTGCCCCTC ATTGCCAAGG GTCACGTCCA GGGCGTGCTG GAGGTCTTCC GTCGCAAACC TGCCGTGCCC GATGGGGAAT GGCTGGAATT CCTGGAGACC CTGGCCGGCC AGGCGGCCGT GGCCATCGAC GACGCGGAAC TCTTCCACCG GCTGGAGCGC GCCAACGTTG AGCTGACCCA GGCCTACGAC CTCACCCTCG AGGGCTGGGC GTACGCCCTC GACCTGAAGG ATGAAGAGAC CGAGGGCCAC AGCCGGCGCG TCACCGAGAT GACGCTGCGC ATCGCCCGGG AGATGGGCCT TACCGCCGAA GAGCTGGCCC ATATCCGGCG CGGGGCGCTT TTGCACGACA TTGGCAAGAT GGGCATTCCG GACGCCATCC TCCTCAAGCC CGGCTCGCTG ACGGACGAAG AATGGGAGAT CATGCGCCGG CACCCGGTGT ACGCCTACCA GATGCTCTCG CGCATTGACT ACCTGCGCCC GGCCCTGGAC ATCCCCTACT GCCACCACGA GAAATGGGAC GGCACGGGAT ACCCGCGCGG CCTGAAGGGC GAGGAGATCC CCTTGGCGGC GCGGATCTTC GCGGTGGTGG ACGCCTACGA CGCCCTGACC AGCGATCGCC CCTACCGCCC CGCCTGGCCG AAAGAGAAGG CGCTGGCCTA CTTGCGGGAG CAGGCCGGCC GGCACTTCGA CCCCCGGGTG GTAGAGGTGT TCCTGCAAAT ACTCGAACCG GAATAA
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Protein sequence | MKTQGEVAAF RMALLYTLFA GAWIFFSDWL LAWLVTDLAW LVRLETYKGW AFVAVTAVLL YFVLQRRLRA LEEAHGARLA AQARERGLAE RLQHYLAASP TVIYALKVEG GAARPVWVSE NIRPLLGYPP EEALQPGWWA AHLHPEDRER VLANQSLLLE AGSLAHEYRF FHKDGRVLWV RDELRMVSDA AARDGQGQEI VGAWTDITAL KEKEKEKQRA ARSFRMLSRC NEAIALAEEE GALTEEICRL LVEEGGYRMA WVGFAEEEPG KRVLPVAQAG FEAGYLEAIS VTWDDAETGR GPTGTAISSG QPVVCRNMLA DPAYVPWRSE ATRRGYASSI ALPLADEKGT FGALNIYAAE PDAFDSDEVD LLGRLANTLS LGINKLRDRG ALKKSENRYR GLFERATDVI FLVDARGRIR DCNPAACAVL GYDRAEMLTK NLQDLISPED LAVEPLRIDQ ALGKPLSFKR KFRRKDGTLI ITEARVTKLE SGLLLGIVRD ITGQVRAEET LRESERLLRE SQELAGIGNY VLDIPAGTWK SSAVLADILG INRKDEHSLE EWSAVIHPDW REHVLRAREE ALEKGAQFRQ EYKIIRKSDG EERWVYQAGK IERDEKGNPV RMIGTILDIT ARRENEEEIR ARHAELAALY ELSTHIRAAK SSADLLPIVL DNVRRLLRAA AAAVTLVSPD RTRFIITLGA GLWEDSTGRT FPADRGLCGL VLDTGKPYVS EDYGAEARAL PLEGGAEKEI GPAAFVPLKS EEELLGVLAV ASRREPGART FTPAEMHLLT AVGEMVGNAL RRMQLYEEAA RRLRQTQALR NIDMAITGSL DLRVTFRVIL DEVTGQLGVD AAAILRRDPY TGTLRYEAWR GFHAVSPEHL SLRLNEGYAG RAALERRALF LPDLREAEPD PAQGHLLAGE GFAAYYAVPL IAKGHVQGVL EVFRRKPAVP DGEWLEFLET LAGQAAVAID DAELFHRLER ANVELTQAYD LTLEGWAYAL DLKDEETEGH SRRVTEMTLR IAREMGLTAE ELAHIRRGAL LHDIGKMGIP DAILLKPGSL TDEEWEIMRR HPVYAYQMLS RIDYLRPALD IPYCHHEKWD GTGYPRGLKG EEIPLAARIF AVVDAYDALT SDRPYRPAWP KEKALAYLRE QAGRHFDPRV VEVFLQILEP E
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