| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daud_1728 |
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| Symbol | |
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| ID | 6026989 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Candidatus Desulforudis audaxviator MP104C |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010424 |
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| Strand | - |
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| Start bp | 1819934 |
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| End bp | 1823449 |
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| Gene Length | 3516 bp |
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| Protein Length | 1171 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 641594547 |
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| Product | putative PAS/PAC sensor protein |
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| Protein accession | YP_001717858 |
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| Protein GI | 169831876 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2206] HD-GYP domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00277] uncharacterized domain HDIG |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.00367624 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGAAGACCC AAGGGGAAGT TGCGGCCTTC CGGATGGCCC TGCTCTACAC GCTCTTCGCC
GGCGCCTGGA TTTTTTTCTC CGACTGGCTG CTGGCCTGGC TGGTGACTGA CCTGGCCTGG
CTTGTTCGCC TGGAAACCTA CAAGGGCTGG GCCTTTGTCG CCGTCACGGC CGTGCTTTTG
TACTTTGTCC TGCAACGCCG GCTTCGGGCG CTGGAAGAGG CCCACGGGGC GCGTTTGGCG
GCCCAAGCTC GGGAGCGGGG ACTGGCGGAG CGCCTGCAGC ACTACCTCGC CGCCAGCCCC
ACCGTCATCT ACGCCCTGAA GGTGGAAGGC GGGGCGGCGC GGCCGGTCTG GGTGAGTGAG
AACATCCGGC CGCTCCTGGG CTACCCGCCG GAGGAAGCCC TGCAGCCCGG CTGGTGGGCC
GCCCATTTGC ACCCGGAAGA CCGGGAGCGG GTCCTGGCCA ACCAGTCCCT TTTGTTGGAA
GCGGGTTCGC TCGCGCACGA ATACCGCTTC TTCCACAAGG ATGGCCGGGT GCTCTGGGTG
CGCGATGAGC TGAGAATGGT GAGCGACGCC GCCGCCCGGG ACGGGCAGGG GCAAGAAATT
GTCGGCGCCT GGACCGACAT TACCGCGCTT AAGGAAAAGG AGAAAGAAAA ACAAAGGGCA
GCGCGTTCCT TCCGAATGCT CAGCAGGTGT AACGAGGCCA TTGCCCTGGC GGAGGAGGAA
GGTGCGCTCA CGGAAGAAAT CTGCCGTCTT CTTGTGGAGG AGGGGGGTTA CCGGATGGCC
TGGGTAGGCT TTGCCGAGGA GGAGCCGGGG AAAAGGGTGC TCCCGGTGGC CCAGGCCGGG
TTCGAAGCGG GGTACCTGGA GGCCATTTCC GTAACCTGGG ACGATGCCGA AACAGGGCGA
GGCCCTACCG GCACCGCCAT TTCAAGCGGC CAGCCAGTAG TTTGCCGGAA CATGCTTGCG
GACCCAGCCT ATGTTCCCTG GCGCAGCGAA GCTACGAGGC GCGGCTATGC CTCCTCCATC
GCGCTGCCGC TTGCCGACGA AAAAGGAACG TTCGGCGCGC TGAATATCTA CGCCGCGGAG
CCGGATGCTT TTGACTCAGA CGAAGTAGAC TTGCTTGGTC GGTTGGCCAA TACTTTGTCC
CTGGGAATTA ATAAGCTGCG AGACCGGGGT GCGCTAAAGA AAAGCGAGAA CCGCTACCGC
GGCCTCTTCG AGCGGGCCAC CGACGTCATC TTCCTGGTCG ATGCCCGGGG GCGCATCCGG
GACTGCAACC CGGCCGCTTG CGCCGTGCTG GGGTATGACC GCGCGGAAAT GCTCACGAAA
AACCTGCAAG ACCTGATTTC GCCTGAAGAC CTGGCGGTCG AGCCCTTACG GATCGACCAG
GCGCTGGGAA AACCCCTTTC TTTCAAGCGC AAGTTTCGGC GCAAAGACGG AACCTTAATA
ATCACCGAAG CCAGGGTCAC CAAGCTCGAA AGCGGGTTGC TCTTAGGCAT TGTTCGCGAC
ATTACCGGAC AGGTGCGGGC GGAGGAGACA CTCAGAGAAA GCGAAAGGTT GTTGCGGGAA
TCCCAGGAGT TGGCCGGGAT AGGAAACTAT GTTTTGGATA TCCCCGCGGG CACCTGGAAA
AGCTCGGCCG TGCTGGCCGA TATTTTGGGA ATCAACCGGA AAGACGAGCA TTCCCTGGAA
GAATGGTCTG CCGTTATCCA CCCGGACTGG CGGGAACATG TACTCCGGGC ACGCGAAGAA
GCCCTGGAAA AAGGTGCGCA GTTCCGGCAG GAATACAAAA TAATCCGGAA AAGCGACGGA
GAAGAGCGGT GGGTTTATCA GGCGGGCAAA ATTGAGCGCG ATGAAAAAGG GAATCCGGTC
AGAATGATCG GCACCATACT GGACATCACC GCGCGCAGGG AAAATGAAGA AGAAATCCGC
GCCCGCCACG CCGAACTGGC CGCCCTGTAC GAACTCTCCA CCCACATACG CGCCGCCAAA
AGCAGCGCCG ACCTATTGCC CATTGTGCTG GACAATGTCC GCCGCTTGCT CCGGGCCGCC
GCCGCTGCCG TCACCCTCGT CTCGCCGGAC CGGACGCGCT TTATTATCAC CTTGGGCGCG
GGACTTTGGG AGGACAGCAC CGGCCGGACC TTCCCGGCGG ACCGGGGACT GTGCGGCCTC
GTGCTGGATA CCGGAAAGCC CTACGTGAGC GAAGACTACG GCGCCGAGGC CCGGGCTCTT
CCCCTGGAGG GCGGCGCGGA AAAGGAAATC GGCCCGGCGG CCTTCGTGCC GCTGAAATCG
GAGGAGGAAC TGTTGGGCGT GCTGGCCGTC GCCAGCCGCC GGGAGCCGGG GGCCCGGACC
TTCACCCCGG CCGAGATGCA CCTTTTAACC GCCGTCGGCG AGATGGTCGG CAACGCCCTG
CGCCGCATGC AGCTGTACGA AGAGGCCGCG CGCCGCCTGC GCCAGACACA GGCCCTGCGC
AACATCGATA TGGCCATCAC CGGCAGCCTC GACCTGCGCG TCACCTTCAG GGTCATCCTG
GACGAGGTCA CCGGCCAACT GGGCGTGGAC GCCGCCGCCA TTTTGCGCCG CGACCCCTAC
ACCGGGACGC TGCGCTACGA GGCCTGGCGG GGTTTTCACG CCGTAAGTCC GGAGCACCTG
AGCTTGCGCT TGAACGAGGG CTACGCCGGC CGGGCGGCTC TGGAGCGGCG CGCGCTTTTC
CTCCCCGACC TTCGCGAAGC CGAACCGGAT CCGGCCCAGG GGCACCTTCT CGCCGGGGAA
GGTTTCGCCG CCTACTACGC CGTGCCCCTC ATTGCCAAGG GTCACGTCCA GGGCGTGCTG
GAGGTCTTCC GTCGCAAACC TGCCGTGCCC GATGGGGAAT GGCTGGAATT CCTGGAGACC
CTGGCCGGCC AGGCGGCCGT GGCCATCGAC GACGCGGAAC TCTTCCACCG GCTGGAGCGC
GCCAACGTTG AGCTGACCCA GGCCTACGAC CTCACCCTCG AGGGCTGGGC GTACGCCCTC
GACCTGAAGG ATGAAGAGAC CGAGGGCCAC AGCCGGCGCG TCACCGAGAT GACGCTGCGC
ATCGCCCGGG AGATGGGCCT TACCGCCGAA GAGCTGGCCC ATATCCGGCG CGGGGCGCTT
TTGCACGACA TTGGCAAGAT GGGCATTCCG GACGCCATCC TCCTCAAGCC CGGCTCGCTG
ACGGACGAAG AATGGGAGAT CATGCGCCGG CACCCGGTGT ACGCCTACCA GATGCTCTCG
CGCATTGACT ACCTGCGCCC GGCCCTGGAC ATCCCCTACT GCCACCACGA GAAATGGGAC
GGCACGGGAT ACCCGCGCGG CCTGAAGGGC GAGGAGATCC CCTTGGCGGC GCGGATCTTC
GCGGTGGTGG ACGCCTACGA CGCCCTGACC AGCGATCGCC CCTACCGCCC CGCCTGGCCG
AAAGAGAAGG CGCTGGCCTA CTTGCGGGAG CAGGCCGGCC GGCACTTCGA CCCCCGGGTG
GTAGAGGTGT TCCTGCAAAT ACTCGAACCG GAATAA
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| Protein sequence | MKTQGEVAAF RMALLYTLFA GAWIFFSDWL LAWLVTDLAW LVRLETYKGW AFVAVTAVLL
YFVLQRRLRA LEEAHGARLA AQARERGLAE RLQHYLAASP TVIYALKVEG GAARPVWVSE
NIRPLLGYPP EEALQPGWWA AHLHPEDRER VLANQSLLLE AGSLAHEYRF FHKDGRVLWV
RDELRMVSDA AARDGQGQEI VGAWTDITAL KEKEKEKQRA ARSFRMLSRC NEAIALAEEE
GALTEEICRL LVEEGGYRMA WVGFAEEEPG KRVLPVAQAG FEAGYLEAIS VTWDDAETGR
GPTGTAISSG QPVVCRNMLA DPAYVPWRSE ATRRGYASSI ALPLADEKGT FGALNIYAAE
PDAFDSDEVD LLGRLANTLS LGINKLRDRG ALKKSENRYR GLFERATDVI FLVDARGRIR
DCNPAACAVL GYDRAEMLTK NLQDLISPED LAVEPLRIDQ ALGKPLSFKR KFRRKDGTLI
ITEARVTKLE SGLLLGIVRD ITGQVRAEET LRESERLLRE SQELAGIGNY VLDIPAGTWK
SSAVLADILG INRKDEHSLE EWSAVIHPDW REHVLRAREE ALEKGAQFRQ EYKIIRKSDG
EERWVYQAGK IERDEKGNPV RMIGTILDIT ARRENEEEIR ARHAELAALY ELSTHIRAAK
SSADLLPIVL DNVRRLLRAA AAAVTLVSPD RTRFIITLGA GLWEDSTGRT FPADRGLCGL
VLDTGKPYVS EDYGAEARAL PLEGGAEKEI GPAAFVPLKS EEELLGVLAV ASRREPGART
FTPAEMHLLT AVGEMVGNAL RRMQLYEEAA RRLRQTQALR NIDMAITGSL DLRVTFRVIL
DEVTGQLGVD AAAILRRDPY TGTLRYEAWR GFHAVSPEHL SLRLNEGYAG RAALERRALF
LPDLREAEPD PAQGHLLAGE GFAAYYAVPL IAKGHVQGVL EVFRRKPAVP DGEWLEFLET
LAGQAAVAID DAELFHRLER ANVELTQAYD LTLEGWAYAL DLKDEETEGH SRRVTEMTLR
IAREMGLTAE ELAHIRRGAL LHDIGKMGIP DAILLKPGSL TDEEWEIMRR HPVYAYQMLS
RIDYLRPALD IPYCHHEKWD GTGYPRGLKG EEIPLAARIF AVVDAYDALT SDRPYRPAWP
KEKALAYLRE QAGRHFDPRV VEVFLQILEP E
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