Gene Daud_1728 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDaud_1728 
Symbol 
ID6026989 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCandidatus Desulforudis audaxviator MP104C 
KingdomBacteria 
Replicon accessionNC_010424 
Strand
Start bp1819934 
End bp1823449 
Gene Length3516 bp 
Protein Length1171 aa 
Translation table11 
GC content64% 
IMG OID641594547 
Productputative PAS/PAC sensor protein 
Protein accessionYP_001717858 
Protein GI169831876 
COG category[T] Signal transduction mechanisms 
COG ID[COG2206] HD-GYP domain 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00277] uncharacterized domain HDIG 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00367624 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTGAAGACCC AAGGGGAAGT TGCGGCCTTC CGGATGGCCC TGCTCTACAC GCTCTTCGCC 
GGCGCCTGGA TTTTTTTCTC CGACTGGCTG CTGGCCTGGC TGGTGACTGA CCTGGCCTGG
CTTGTTCGCC TGGAAACCTA CAAGGGCTGG GCCTTTGTCG CCGTCACGGC CGTGCTTTTG
TACTTTGTCC TGCAACGCCG GCTTCGGGCG CTGGAAGAGG CCCACGGGGC GCGTTTGGCG
GCCCAAGCTC GGGAGCGGGG ACTGGCGGAG CGCCTGCAGC ACTACCTCGC CGCCAGCCCC
ACCGTCATCT ACGCCCTGAA GGTGGAAGGC GGGGCGGCGC GGCCGGTCTG GGTGAGTGAG
AACATCCGGC CGCTCCTGGG CTACCCGCCG GAGGAAGCCC TGCAGCCCGG CTGGTGGGCC
GCCCATTTGC ACCCGGAAGA CCGGGAGCGG GTCCTGGCCA ACCAGTCCCT TTTGTTGGAA
GCGGGTTCGC TCGCGCACGA ATACCGCTTC TTCCACAAGG ATGGCCGGGT GCTCTGGGTG
CGCGATGAGC TGAGAATGGT GAGCGACGCC GCCGCCCGGG ACGGGCAGGG GCAAGAAATT
GTCGGCGCCT GGACCGACAT TACCGCGCTT AAGGAAAAGG AGAAAGAAAA ACAAAGGGCA
GCGCGTTCCT TCCGAATGCT CAGCAGGTGT AACGAGGCCA TTGCCCTGGC GGAGGAGGAA
GGTGCGCTCA CGGAAGAAAT CTGCCGTCTT CTTGTGGAGG AGGGGGGTTA CCGGATGGCC
TGGGTAGGCT TTGCCGAGGA GGAGCCGGGG AAAAGGGTGC TCCCGGTGGC CCAGGCCGGG
TTCGAAGCGG GGTACCTGGA GGCCATTTCC GTAACCTGGG ACGATGCCGA AACAGGGCGA
GGCCCTACCG GCACCGCCAT TTCAAGCGGC CAGCCAGTAG TTTGCCGGAA CATGCTTGCG
GACCCAGCCT ATGTTCCCTG GCGCAGCGAA GCTACGAGGC GCGGCTATGC CTCCTCCATC
GCGCTGCCGC TTGCCGACGA AAAAGGAACG TTCGGCGCGC TGAATATCTA CGCCGCGGAG
CCGGATGCTT TTGACTCAGA CGAAGTAGAC TTGCTTGGTC GGTTGGCCAA TACTTTGTCC
CTGGGAATTA ATAAGCTGCG AGACCGGGGT GCGCTAAAGA AAAGCGAGAA CCGCTACCGC
GGCCTCTTCG AGCGGGCCAC CGACGTCATC TTCCTGGTCG ATGCCCGGGG GCGCATCCGG
GACTGCAACC CGGCCGCTTG CGCCGTGCTG GGGTATGACC GCGCGGAAAT GCTCACGAAA
AACCTGCAAG ACCTGATTTC GCCTGAAGAC CTGGCGGTCG AGCCCTTACG GATCGACCAG
GCGCTGGGAA AACCCCTTTC TTTCAAGCGC AAGTTTCGGC GCAAAGACGG AACCTTAATA
ATCACCGAAG CCAGGGTCAC CAAGCTCGAA AGCGGGTTGC TCTTAGGCAT TGTTCGCGAC
ATTACCGGAC AGGTGCGGGC GGAGGAGACA CTCAGAGAAA GCGAAAGGTT GTTGCGGGAA
TCCCAGGAGT TGGCCGGGAT AGGAAACTAT GTTTTGGATA TCCCCGCGGG CACCTGGAAA
AGCTCGGCCG TGCTGGCCGA TATTTTGGGA ATCAACCGGA AAGACGAGCA TTCCCTGGAA
GAATGGTCTG CCGTTATCCA CCCGGACTGG CGGGAACATG TACTCCGGGC ACGCGAAGAA
GCCCTGGAAA AAGGTGCGCA GTTCCGGCAG GAATACAAAA TAATCCGGAA AAGCGACGGA
GAAGAGCGGT GGGTTTATCA GGCGGGCAAA ATTGAGCGCG ATGAAAAAGG GAATCCGGTC
AGAATGATCG GCACCATACT GGACATCACC GCGCGCAGGG AAAATGAAGA AGAAATCCGC
GCCCGCCACG CCGAACTGGC CGCCCTGTAC GAACTCTCCA CCCACATACG CGCCGCCAAA
AGCAGCGCCG ACCTATTGCC CATTGTGCTG GACAATGTCC GCCGCTTGCT CCGGGCCGCC
GCCGCTGCCG TCACCCTCGT CTCGCCGGAC CGGACGCGCT TTATTATCAC CTTGGGCGCG
GGACTTTGGG AGGACAGCAC CGGCCGGACC TTCCCGGCGG ACCGGGGACT GTGCGGCCTC
GTGCTGGATA CCGGAAAGCC CTACGTGAGC GAAGACTACG GCGCCGAGGC CCGGGCTCTT
CCCCTGGAGG GCGGCGCGGA AAAGGAAATC GGCCCGGCGG CCTTCGTGCC GCTGAAATCG
GAGGAGGAAC TGTTGGGCGT GCTGGCCGTC GCCAGCCGCC GGGAGCCGGG GGCCCGGACC
TTCACCCCGG CCGAGATGCA CCTTTTAACC GCCGTCGGCG AGATGGTCGG CAACGCCCTG
CGCCGCATGC AGCTGTACGA AGAGGCCGCG CGCCGCCTGC GCCAGACACA GGCCCTGCGC
AACATCGATA TGGCCATCAC CGGCAGCCTC GACCTGCGCG TCACCTTCAG GGTCATCCTG
GACGAGGTCA CCGGCCAACT GGGCGTGGAC GCCGCCGCCA TTTTGCGCCG CGACCCCTAC
ACCGGGACGC TGCGCTACGA GGCCTGGCGG GGTTTTCACG CCGTAAGTCC GGAGCACCTG
AGCTTGCGCT TGAACGAGGG CTACGCCGGC CGGGCGGCTC TGGAGCGGCG CGCGCTTTTC
CTCCCCGACC TTCGCGAAGC CGAACCGGAT CCGGCCCAGG GGCACCTTCT CGCCGGGGAA
GGTTTCGCCG CCTACTACGC CGTGCCCCTC ATTGCCAAGG GTCACGTCCA GGGCGTGCTG
GAGGTCTTCC GTCGCAAACC TGCCGTGCCC GATGGGGAAT GGCTGGAATT CCTGGAGACC
CTGGCCGGCC AGGCGGCCGT GGCCATCGAC GACGCGGAAC TCTTCCACCG GCTGGAGCGC
GCCAACGTTG AGCTGACCCA GGCCTACGAC CTCACCCTCG AGGGCTGGGC GTACGCCCTC
GACCTGAAGG ATGAAGAGAC CGAGGGCCAC AGCCGGCGCG TCACCGAGAT GACGCTGCGC
ATCGCCCGGG AGATGGGCCT TACCGCCGAA GAGCTGGCCC ATATCCGGCG CGGGGCGCTT
TTGCACGACA TTGGCAAGAT GGGCATTCCG GACGCCATCC TCCTCAAGCC CGGCTCGCTG
ACGGACGAAG AATGGGAGAT CATGCGCCGG CACCCGGTGT ACGCCTACCA GATGCTCTCG
CGCATTGACT ACCTGCGCCC GGCCCTGGAC ATCCCCTACT GCCACCACGA GAAATGGGAC
GGCACGGGAT ACCCGCGCGG CCTGAAGGGC GAGGAGATCC CCTTGGCGGC GCGGATCTTC
GCGGTGGTGG ACGCCTACGA CGCCCTGACC AGCGATCGCC CCTACCGCCC CGCCTGGCCG
AAAGAGAAGG CGCTGGCCTA CTTGCGGGAG CAGGCCGGCC GGCACTTCGA CCCCCGGGTG
GTAGAGGTGT TCCTGCAAAT ACTCGAACCG GAATAA
 
Protein sequence
MKTQGEVAAF RMALLYTLFA GAWIFFSDWL LAWLVTDLAW LVRLETYKGW AFVAVTAVLL 
YFVLQRRLRA LEEAHGARLA AQARERGLAE RLQHYLAASP TVIYALKVEG GAARPVWVSE
NIRPLLGYPP EEALQPGWWA AHLHPEDRER VLANQSLLLE AGSLAHEYRF FHKDGRVLWV
RDELRMVSDA AARDGQGQEI VGAWTDITAL KEKEKEKQRA ARSFRMLSRC NEAIALAEEE
GALTEEICRL LVEEGGYRMA WVGFAEEEPG KRVLPVAQAG FEAGYLEAIS VTWDDAETGR
GPTGTAISSG QPVVCRNMLA DPAYVPWRSE ATRRGYASSI ALPLADEKGT FGALNIYAAE
PDAFDSDEVD LLGRLANTLS LGINKLRDRG ALKKSENRYR GLFERATDVI FLVDARGRIR
DCNPAACAVL GYDRAEMLTK NLQDLISPED LAVEPLRIDQ ALGKPLSFKR KFRRKDGTLI
ITEARVTKLE SGLLLGIVRD ITGQVRAEET LRESERLLRE SQELAGIGNY VLDIPAGTWK
SSAVLADILG INRKDEHSLE EWSAVIHPDW REHVLRAREE ALEKGAQFRQ EYKIIRKSDG
EERWVYQAGK IERDEKGNPV RMIGTILDIT ARRENEEEIR ARHAELAALY ELSTHIRAAK
SSADLLPIVL DNVRRLLRAA AAAVTLVSPD RTRFIITLGA GLWEDSTGRT FPADRGLCGL
VLDTGKPYVS EDYGAEARAL PLEGGAEKEI GPAAFVPLKS EEELLGVLAV ASRREPGART
FTPAEMHLLT AVGEMVGNAL RRMQLYEEAA RRLRQTQALR NIDMAITGSL DLRVTFRVIL
DEVTGQLGVD AAAILRRDPY TGTLRYEAWR GFHAVSPEHL SLRLNEGYAG RAALERRALF
LPDLREAEPD PAQGHLLAGE GFAAYYAVPL IAKGHVQGVL EVFRRKPAVP DGEWLEFLET
LAGQAAVAID DAELFHRLER ANVELTQAYD LTLEGWAYAL DLKDEETEGH SRRVTEMTLR
IAREMGLTAE ELAHIRRGAL LHDIGKMGIP DAILLKPGSL TDEEWEIMRR HPVYAYQMLS
RIDYLRPALD IPYCHHEKWD GTGYPRGLKG EEIPLAARIF AVVDAYDALT SDRPYRPAWP
KEKALAYLRE QAGRHFDPRV VEVFLQILEP E