Gene Daud_0815 details

Gene Information

• Locus tag: Daud_0815
• ID: 6026021
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Candidatus Desulforudis audaxviator MP104C
• Kingdom: Bacteria
• Replicon accession: NC_010424
• Strand: +
• Start bp: 857723
• End bp: 859669
• Gene Length: 1947 bp
• Protein Length: 648 aa
• Translation table: 11
• GC content: 56%
• IMG OID: 641593625
• Product: TRAG family protein
• Protein accession: YP_001716962
• Protein GI: 169830980
• COG category: [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG3505] Type IV secretory pathway, VirD4 components

Plasmid Coverage information

• Num covering plasmid clones: 13
• Plasmid unclonability p-value: 0.805111
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

TTGGGTATCA ACGCCCTGCA GCTCAAAGCC GCCTACCGCC GTGCCGGGAT GGTACTCCGT 
CGCCGTCGCC TGCGTCGTTT GGCCGTTGCC TTGGTCTTGT ATGTCCCAAG TGCTTGGCTC 
CCGGGGTCGT TCACGGTTCT CTTTGTGGAT TATGACCTGG CCATGCGTTG TTTTCAAAAC 
CCCCTTCTGG CTGCCGTGAC TGTGCCTTTT CAGGGCACAT TGCCCTGGTG GTTGGGCCTT 
AACTTGGTCT TTGGTTTCTT TGGGTACTGG TACTATCTTC AACTCCGGGC CAGGTTTCCG 
GACACCTTCA ATCCCAGAGA CGAGGTGGAC TTTATGCGCG ACCCTTCCTG CGGTACGTCC 
CGTTGGCTGG ATCGGCGGAA TGCCGAAAAA GTTCTCTCTT TCGGTCATGG TCCGGGCTTT 
CTTTTTGGTA CTATGGAGGG CGACCCCGTG CGCCTTCACG GTTCCGACTT AAACCGCAAC 
GTCATCGTTT TCGGTTCCCC TGGCTCCCGT AAGACACGGA GCCTGGTGAT TCCGAACATC 
CTTCAGGCCG TGGTTTCCGG TGAGTCCTGC GTCATCACCG ACCCCAAGGG AGAGATCTTG 
CGGTACACGT TGGGCTATCT CCAGTCCCGC AATTACAACG TGAACGTTTT TAACCTGGTG 
GAGATGCACC GCTCCGACCG CTGGAACCCT TTGGCCGAAA TCCAGACCGG GCTGGACGCC 
CAGCTCTTTT CCGAAGTGGT AATCGCGAAC ACCGCCGTTC CCGGCATCCG CAAAATGGGC 
GGCGACCCCT TCTGGACCAG GGCGGAGCAG AACTTGTTAA AAGCCCTGGC TCTCTACGTG 
GTCAACGAGA TGCCCCCAGA GCAGAGAAAC TTGGAGTCTC TTTATGCCGT CCTTTCCTGC 
GGCAGTTTGG ATCGTTTGGA TATAACTTTC GGTTCATTAG CTCCTGACCA CCCGGCCAAG 
GCTCCGTACA ACGTTTTCTC TCATGCCGAC AAGCCTGTAA AGGGCGGCGT GATCATTGGT 
CTTGGGACCA GGCTCCAGGT TGTCCAGAAC CCCGAGGTGA AAAGGCTTAC TTCCACCAGT 
GACATTGATT TAAGGGCCCC CGGCCTTGAG AGATGCGCTT ATTTCGGGAT CGTTTCGGAC 
ACCGACACCA CCTTTGACTT TTTGGCCAGC CTGTTCTTCA CGTTCTTGTT CATTAAGCTG 
ACCCGGCTGG CGGATTCGAA GGGCGGCCCG TGTCCGGTGC GGGTAAACTT CATCTTGGAC 
GAGTTTTGCA ACATCGGTTC GATTCCTGAC TTTAAGAAGC GCATCGCCAC TGTTCGCTCC 
CGCGGGTTAA ACTGCGTTCT GATCACCCAG TCCGTGGCTC AGCTCAAAAA CCGCTATCCG 
GACGATGAAT GGCAGGAGAT TATCTCCTGC TGTGACTCCC GGCTTTTGTT CGGGGCCAAC 
GAGCCCATGA CTGCCAAGTA CTTTTCCGAC TTGCTGGGTG TGGGCACGGT GAACCGCGTG 
AGCAGGCAGC ATAAGGTCAC TGCTCTCGAT CCTGTGAAGT TGGGCCATGC GCCGTCTCCG 
CGCAATCTTC TCAACTTGGA CGAGATTCTG CGCCTGAATC GGGAAAAAGC CGTGCTCTGT 
CTGGCCAGCT TTCCTCCGGC CATGATCGAA AAGCTGGACT TTACCGGGTA CCCCGAGGGC 
GGCTCTCTCC CGGATGCCGC CGATTTGGGG GGCGTGGTCT ACCGTCCGGC GCATCTGGAC 
GAAACGCCCC CCGAAGTCAT AGTGGAGTAT TCTGGGTGCT CTGTGCCGCG GACGGAAAAA 
CTTAACGGAA AAACCAAGAA AAAGAAAGAC GACCCTGAAG ATGGCGCTGA ATTGGCGGAA 
GATCCTTTTG ACCCCTTCCG GGATCCGTTT GCTCCGGAGC TGGACAGTGA AGAAGACCTT 
GGTATGTACC AGGATCAGGA CAAATAG 

 

Protein sequence

MGINALQLKA AYRRAGMVLR RRRLRRLAVA LVLYVPSAWL PGSFTVLFVD YDLAMRCFQN 
PLLAAVTVPF QGTLPWWLGL NLVFGFFGYW YYLQLRARFP DTFNPRDEVD FMRDPSCGTS 
RWLDRRNAEK VLSFGHGPGF LFGTMEGDPV RLHGSDLNRN VIVFGSPGSR KTRSLVIPNI 
LQAVVSGESC VITDPKGEIL RYTLGYLQSR NYNVNVFNLV EMHRSDRWNP LAEIQTGLDA 
QLFSEVVIAN TAVPGIRKMG GDPFWTRAEQ NLLKALALYV VNEMPPEQRN LESLYAVLSC 
GSLDRLDITF GSLAPDHPAK APYNVFSHAD KPVKGGVIIG LGTRLQVVQN PEVKRLTSTS 
DIDLRAPGLE RCAYFGIVSD TDTTFDFLAS LFFTFLFIKL TRLADSKGGP CPVRVNFILD 
EFCNIGSIPD FKKRIATVRS RGLNCVLITQ SVAQLKNRYP DDEWQEIISC CDSRLLFGAN 
EPMTAKYFSD LLGVGTVNRV SRQHKVTALD PVKLGHAPSP RNLLNLDEIL RLNREKAVLC 
LASFPPAMIE KLDFTGYPEG GSLPDAADLG GVVYRPAHLD ETPPEVIVEY SGCSVPRTEK 
LNGKTKKKKD DPEDGAELAE DPFDPFRDPF APELDSEEDL GMYQDQDK