| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caul_3020 |
|---|
| Symbol | |
|---|
| ID | 5900475 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Caulobacter sp. K31 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010338 |
|---|
| Strand | + |
|---|
| Start bp | 3288208 |
|---|
| End bp | 3288747 |
|---|
| Gene Length | 540 bp |
|---|
| Protein Length | 179 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 641563521 |
|---|
| Product | HlyD family secretion protein |
|---|
| Protein accession | YP_001684645 |
|---|
| Protein GI | 167646982 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1566] Multidrug resistance efflux pump |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 32 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.133267 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCTCGACG CCCTGACCGA GGCCCAGGCC AACCGCCGGC CGCGCGGCGA GGAACTGACC
AAGGCCAGCG ACAAGGCCGG CCTGACCGTG CTGACCGCGC CGCAGGACGG GGTGATCCAG
CAGATGCAGG TCCACACCCT GGGCGGCGTC GTCAAGCCCG CCGACCCCCT GATGGTGCCG
GCGCCGCGCG GCGGCGAACT GATCATCGAG GCCCGCGTCC AGAACCGCGA CGCCGGCTTC
GTGCACGAGG GCCAGAGCGT CGAGATCAAG CTCGAGGCCT ATCCGTTCAC CCGCTACGGC
GTGGTCCACG GGGTGATCGA ACACATCGGC CGCAACGCCG TGCAGGACGA AAAAGAAGGC
CCTGTCTTCC CGGCCATGGT TAAGCTGTCA CAGCCGTGGA TCATGGTCGA AGGCCGACGC
CTGATGCTGG CCCCGGGCTT GGCCGCCACG GTCGAGATCA AGACCGGCGA GCGCCGAATC
ATCGGGTTCC TGCTGTCGCC CTTGGCGCGG CGGGTTAAGG AAGGCGGGCG GGAGCGTTGA
|
|---|
| Protein sequence | MLDALTEAQA NRRPRGEELT KASDKAGLTV LTAPQDGVIQ QMQVHTLGGV VKPADPLMVP
APRGGELIIE ARVQNRDAGF VHEGQSVEIK LEAYPFTRYG VVHGVIEHIG RNAVQDEKEG
PVFPAMVKLS QPWIMVEGRR LMLAPGLAAT VEIKTGERRI IGFLLSPLAR RVKEGGRER
|
|---|
| |