| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caul_2098 |
|---|
| Symbol | |
|---|
| ID | 5899553 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Caulobacter sp. K31 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010338 |
|---|
| Strand | + |
|---|
| Start bp | 2244095 |
|---|
| End bp | 2246140 |
|---|
| Gene Length | 2046 bp |
|---|
| Protein Length | 681 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 641562587 |
|---|
| Product | general secretion pathway protein D |
|---|
| Protein accession | YP_001683724 |
|---|
| Protein GI | 167646061 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1450] Type II secretory pathway, component PulD |
|---|
| TIGRFAM ID | [TIGR02517] general secretion pathway protein D |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.103091 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.703642 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCCGCA TTTCCCGCCG CGTCCTATTC ACGCTGTCCG GGGCAGTCGT CGTCCTGACC
GGCTGCGCCA CGCCCGCGGC GCCGGTCCGA GCACCGGCGC CGGCGCGCGC TCCGAGCCCG
GTTCCGGCGC CGGTCGTCGA AGCCGCGCCA GGCGCAGGGA CCAGGGCCAC CATCCTGCCC
GGGACGCAGG CCTATCCCGC CGCCGCCGCG CGGACCGCCG CGCCGAGCTC CGGCCCGGTG
GCGCTGAACT TCCCTGGCGT AGGGGTTCGG GAATTCGCCC AGGCGGTGCT CGGCGATATC
CTGCACCTGC CCTATGCCGT CAGCGCGGCG GCCTCCGGAA CGGTGACGCT GGTCACTCCG
CGGCCGATCG CCAGGGCCGA CGTGCTGCCC GCCGTCGAGG AGGCGTTGAG GAACGTTGGG
CTGGCGCTGG TGTCGCGGGA TGGTGTTCAG ACGATCATGA CGCTCGGCGA CGCTCGCGCC
CAGGGGCTGA CGGTGGGCGC GGACCAGCCG GGTTTCGGTA GCGAGACGGT GGCTCTGCGC
TTCGCCGGCC CCCAAGCGCT GAAGACGCTG CTGGACCCGA TCGTGCCGGG CGTCATCACC
AGCGCCGATC CGGCGACCAA CACCCTGGTG CTGTCCGGCT CCGCGGGGCA GCGGCGGGCG
GTGCGCGACC TCGTGCAGCA GTTCGACGTC GACTGGCTGA AAGGCATGAG CTTCGGGCTA
TACGTTCCCA AGCACACCGA CGCCCGGCTG ATCGCGCCCG AACTGGACAA GCTGATCAAC
GCGCCAGGAT CGCCGATGGC CGGCCGGGTC AGGCTAGTGG CGATGGAGAA GCTGAACGGC
ATCGTCGCCA TCTCGTCCCA GCCGCAATAT CTCGAAGACG TGAACCGCTG GATCGAGGTG
CTGGACCGCG AAGGTCAGTC CACGGAACGT CGCCTGTTCG TCTATCGTGT CCAGAACGGA
CGGGCGTCGG ACCTGTCGCG CGTGCTGGCC TCGGCCTTCG GGCGCGGCGG AGGCTCGTCC
GCCGCCGCGC CAGGGGGCAA TCGGCCGGCG CTCGATCGCC TGGGCGTCGA GGCCGCCGCC
TCACCGCTGC TGGCGCCGTC CAACGGCCAG ACCCTGCCCG GCCAGTCGCC AGCGCCCGCC
GCGCCCGACA TGGCGGGCGG CCCCGCTGAC GGTCTCACCT TCACCAGCGA CGAGACCAAC
AACGCTGTCG TCGCCTACGC CACGCCGCGC GAATACGCCT TGATCGAGGA CGCGTTGCGC
AAGCTGGACG TAGTGCCGCT GCAGGTGGTG ATCGAGGCGG TGGTGACCGA GGTTTCGCTG
AATGACGCCC TGCGCTACGG CAGCCAGTGG TTCATCCGGT CGGGCGACGA CCGCGCGATC
CTGAGCCGGG GCAAGACGGC CGATCCGGCT TCGACCTTTC CCGGCTTCAC CTACCTGCTG
AACCGCTCGT CGATCGCCGC CACGCTGGAC GCCCTGTCCA GCGTCACCCA TGTCGAGGTG
CTCTCGGCGC CCAACCTGAT GGTGCTGAAC AACCAGACCG CCTCGCTGGA GGTTGGCGAC
CAGGTGCCTG TCTCGACAGG GTCGGCGCTC AACAGCAGCT CGGTGATCAG CTCCATCGAG
TATCGGGACA CCGGGGTGCT GCTGAAGATC ACCCCCCGGG TCAACAGTGG CGGCCTGGTG
TTGCTGGACA TCGCCCAGGA GGTCAGCGAC GTCTCGCCGA CCTTGAGTTC GACCATCGAC
TCCCCGACGA TTTCGGTGCG CAAGATCGCG ACCTCGATCG CCGTCCAGGA TGGCCAGACC
GTCGCCCTGG GCGGCCTCAT TCGCGACAAC AACAAGCGGC TGCGCAACGG GGTGCCGTTC
CTCAGCGCGG TGCCTGTGCT GGGCGCCCTG GCCGGCTCGC GCGACAATTC GCGGGAGCGG
ACTGAGCTCC TGGTGCTGCT GACGCCAAGG GTCTTGCGCA ACAGCGGCGA CATCCAGGCC
GTGACCGACG AACTGCGCGA AAAGATCCGT TCCATCTCGC CCCAACCCGC GCGCTTCCTG
CCATGA
|
|---|
| Protein sequence | MIRISRRVLF TLSGAVVVLT GCATPAAPVR APAPARAPSP VPAPVVEAAP GAGTRATILP
GTQAYPAAAA RTAAPSSGPV ALNFPGVGVR EFAQAVLGDI LHLPYAVSAA ASGTVTLVTP
RPIARADVLP AVEEALRNVG LALVSRDGVQ TIMTLGDARA QGLTVGADQP GFGSETVALR
FAGPQALKTL LDPIVPGVIT SADPATNTLV LSGSAGQRRA VRDLVQQFDV DWLKGMSFGL
YVPKHTDARL IAPELDKLIN APGSPMAGRV RLVAMEKLNG IVAISSQPQY LEDVNRWIEV
LDREGQSTER RLFVYRVQNG RASDLSRVLA SAFGRGGGSS AAAPGGNRPA LDRLGVEAAA
SPLLAPSNGQ TLPGQSPAPA APDMAGGPAD GLTFTSDETN NAVVAYATPR EYALIEDALR
KLDVVPLQVV IEAVVTEVSL NDALRYGSQW FIRSGDDRAI LSRGKTADPA STFPGFTYLL
NRSSIAATLD ALSSVTHVEV LSAPNLMVLN NQTASLEVGD QVPVSTGSAL NSSSVISSIE
YRDTGVLLKI TPRVNSGGLV LLDIAQEVSD VSPTLSSTID SPTISVRKIA TSIAVQDGQT
VALGGLIRDN NKRLRNGVPF LSAVPVLGAL AGSRDNSRER TELLVLLTPR VLRNSGDIQA
VTDELREKIR SISPQPARFL P
|
|---|
| |