Gene PputGB1_4672 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPputGB1_4672 
Symbol 
ID5872480 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida GB-1 
KingdomBacteria 
Replicon accessionNC_010322 
Strand
Start bp5212908 
End bp5216387 
Gene Length3480 bp 
Protein Length1159 aa 
Translation table11 
GC content63% 
IMG OID641549805 
Productexodeoxyribonuclease V, gamma subunit 
Protein accessionYP_001670894 
Protein GI167035663 
COG category[L] Replication, recombination and repair 
COG ID[COG1330] Exonuclease V gamma subunit 
TIGRFAM ID[TIGR01450] exodeoxyribonuclease V, gamma subunit 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.000155523 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGGCTACTA CCACTCTCCA CCCCGGCTTC ATGATCGTCC ACGGCAACCG CCTCGACGAC 
CTGCGCAGCC TGGTAGTGAG CTGGATGCGT CGCTATCCCC TGGCGCCGCT GGAAAACGAA
ATAGCCTTGG TGCAAAGCAA TGGCATCGCC CAATGGCTCA AGTTGGCCCT GGCCGAAGAC
CCGCTGGAAG ATGACCTGGG CGGCTGTGGC ATCGCCGCCG CAATCGATGT GCAACTACCC
GGTAGCTTCA TGTGGCAGCT ATACCGCAGC GTGCTGGGCC GTGACGAAAT TCCCGAAGTT
TCCCTGCTCG ACAAGGCCCC ACTCACGTGG CGCCTGATGC GCCTGTTACC CGCCCTGATC
GAACGCCCCC ATTTCGAGCC GCTGCGGCGC TTCCTTACCG ACGACAGCGA CCTGCGCAAG
CGCTACCAGC TAGCCGAACG GCTAGCGGAC CTATTCGACC AGTACCAGGT CTACCGCGCC
GACTGGCTCA AGGACTGGGC CGCAGGCGAG CATGTCCTCA ACACCGCCCG TGGCGAGCGC
AAAGCGCTGC CGCCGGGCAA CCGTTGGCAA GCCGAGTTGT GGCGAGCATT ACTGGAAGAT
GTTGGCGAGC AGGGTATGGC GCAGAGCCGT GCCGGGGTTC ACCAACGCTT CATCGAGCGG
ATCAATAGCC TGGAGCAGGC ACCTGCAGGG CTGCCACCGC GGGTGATCGT GTTTGGCATC
TCCTCACTAC CCGCCCAGGC CCTGGAAGCA CTGGCCGGTC TGGCGCGTTT CAGCCAGGTG
CTGTTGTGCG TTCATAACCC ATGCCGCCAC CACTGGGCCG ACATCGTTGC CGACAAGGAC
CTGTTACGCC ACCAGTACAA ACGCCAGCAA CGCAAGCAGG GCATGCCCCT GCAACTGGAT
GACCAGTCGT TGCACCAGCA TGCCCATCCG TTGCTGGCCG CCTGGGGCAA ACAAGGCCGC
GACTACATCA ACCTGCTCGA CAGCTACGAC GACCCGGGCA GCTACCAGGG CGTGTTCAGC
GATGGCCGCA TCGACCTGTT CAGTGACGGT TCGCCCACCA CGCTGCTCAA TCAACTGCAG
GACGACATCC TGGAGTTGCG CCCGCTCACC GAAACCCGTG AGCTGTGGCC GCCCGTGGAC
ACTGCAAAGG ATCGCTCGAT CCGCTTCCAC ATCGCCCATA GCCCGCAACG TGAAGTGGAA
ATCCTCCACG ACCAACTGTT GGCCCGCTTC AGCGCCGACG CAACTTTGCG CCCGCGTGAC
GTGATCGTCA TGCTACCGGC CATCGACACT TACGCGCCGC ACATCCGCGC TGTCTTTGGC
CAGTTGCAGC GCAACGACCC GCGCTACATC CCGTTCACCC TGACCGACCA GGGCCAGCGC
GGCCGCGAAC CTTTGCTGAT CGCTCTTGAG CACTTGCTCA AACTGCCAGA CAGCCGTTTC
GCGGTCAGCG AAGTGCTTGA CCTGCTGGAC GTGCCGGCAG TGCGCGCTCG CTTTGGTATT
CGCGAAAACG ACCTGCCCAC GCTACACCGC TGGATCGAGG GGGCCGGCAT ACGCTGGGGC
CTCAACGCCG AGCAGCGGGC CAGTCTTGGT TTGCCCGCCG GGCTCGAACA GAACAGTTGG
CGCTTCGGCC TGCGGCGTAT GCTGTTGGGC TATGCAGTGG GTGTGGGCGT GGCCTGTGAC
GGCATTGAAC CCTACGATGA AATCGGTGGC CTGGACGCTG CACTGATCGG CCCACTGGTC
GCGCTGCTCG ATGCGCTCGA AGTCGCCTGT CAGGCCTTGT CCGAGCCCGC CACCGTCACG
CAGTGGGGCG AGCGCCTGCA TGCTTTGCTA CAGGTGTTTT TCCTGGCCGA GGGCGAGCGT
GACGAGTACC TGCTGATGCA ACTGCAAGAT CTGCGCGATA GCTGGCTTGA AGTGTGCGAG
ACCGTTGGCC TGCAAGACCC GTTGCCGCTG GCCGTGGTGC GTGAAGCCTG GCTGTCGGGC
CTCGATCAGG GCAAGCTGTC ACAGCGCTTC TTAGCCGGCT CGGTGAACTT CTGCACCCTG
ATGCCCATGC GCGCCATCCC GTTCCGGGTG GTTTGCCTGC TGGGCATGAA CGATGGCGAC
TACCCGCGCG CCCAGCAACC GCTGGACTTC GACTTGATGG CCAGCGACTA CCGCCCCGGT
GACCGCTCTC GCCGCGAAGA CGACCGTTAC CTGCTGCTGG AGGCGCTGTT GTCGGCACGC
GACCAGCTGT ATGTCAGTTG GGTCGGGCGC AGTATCCGTG ACAATAGCGA ACGCCCGGCC
TCGGTACTGA TCGGCCAGTT GCGCGATCAC ATCGCCACGG GATGGCATCT GGCCGGCATG
CAGCAGGGGC AGCCAGCCGA ACCGGGCGAG CAACTGCTGC ACGCTCTGAC TCAGGAGCAT
CCCTTGCAGC CGTTTAGCGC ACGCTACTTC CAGAAAGGCA GCCCGTTGTT CAGCTTTGCC
CATGAATGGC AACTGCTGCA CCAGCATGGC GAGACAGATG AACAGGGCGA GCCCGGCCTG
CCGCCATACC TAGGTGATGA AGCCCTGAGC CTGACCCAAC TGAATGACTT TCTGCGCCAT
CCGGTACGGC ACTTTTTCAG CCAGCGCTTG AAGGTGTACT TTGAAGCGCT GGAAGCACCA
ACCCCGGACG AAGAACCCTT CGTCCTCGAT ACGCTGCAAC GCTATGGCGC CAGTGAAAGC
CTGCTTGGCG CAGCCTTGGC CGAGCCGGAC AATGCCGAAC AGGCCTTGCG TGCCCAGGCC
CGGCGCCTGC AGGCCTGCGG TTTGCTGCCG CTGGCCGGTT TCGGAGAATC GCTGCAAAGC
GAGTTGATCG AACCGCTACC CGATTTGTTG CAACGTCACC AACAGCTGCT GCAACGCTGG
CCTCAGCTGG TCGAGGGCGC TTTGCCGGTG CATTTCGAGC ACGCTCAGCA CCGTCTCGAA
GGCTGGTTGG GCCGGGTGTT CCAGGCTCAG GACCAGAGCC TGCTCAGCAT CACCACGGTA
CCCAACACAA TCAGCGCCGG GCGCAACAAC CTCAAGTGGC ATCGTCTGAT CGCACCTTGG
GTTACGCACC TGGTCGCCTG TGCGGCCGGC TATCCCTACA ACAGTGCACT GGTAGCCAGC
GACCTGACCC TGTTACTTGC ACCGCTACCG CAAGCACAGG CTGCTCAGCT GTTGGGCGAC
CTGCTGGTGG CCCGTCAGGC GGCGATGAAT GCGCCGCTGC CCGTCGCGGC CAAGACCGCG
TTCGCCTGGC TGGCCCAGGA CGACGCCGAC AAGGCTTTGG CCGCCGCAGC CCGTGCCTAT
GAAGGCGACG AGCGCACCAG CTTTGGCGAG CGAAGTGAGA GCATCGCTCT GGCCCGCCAG
TTCCGCGACT TTGCTGCACT GACGGCTGAC GAAACCTTTG AAGGCTGGTG CGAAACCTTG
TACCGCCCGT TGTTCACCGC CCCTTGGCAG ACCCTGGGCA ACCCGGAGAA AGGCGCATGA
 
Protein sequence
MATTTLHPGF MIVHGNRLDD LRSLVVSWMR RYPLAPLENE IALVQSNGIA QWLKLALAED 
PLEDDLGGCG IAAAIDVQLP GSFMWQLYRS VLGRDEIPEV SLLDKAPLTW RLMRLLPALI
ERPHFEPLRR FLTDDSDLRK RYQLAERLAD LFDQYQVYRA DWLKDWAAGE HVLNTARGER
KALPPGNRWQ AELWRALLED VGEQGMAQSR AGVHQRFIER INSLEQAPAG LPPRVIVFGI
SSLPAQALEA LAGLARFSQV LLCVHNPCRH HWADIVADKD LLRHQYKRQQ RKQGMPLQLD
DQSLHQHAHP LLAAWGKQGR DYINLLDSYD DPGSYQGVFS DGRIDLFSDG SPTTLLNQLQ
DDILELRPLT ETRELWPPVD TAKDRSIRFH IAHSPQREVE ILHDQLLARF SADATLRPRD
VIVMLPAIDT YAPHIRAVFG QLQRNDPRYI PFTLTDQGQR GREPLLIALE HLLKLPDSRF
AVSEVLDLLD VPAVRARFGI RENDLPTLHR WIEGAGIRWG LNAEQRASLG LPAGLEQNSW
RFGLRRMLLG YAVGVGVACD GIEPYDEIGG LDAALIGPLV ALLDALEVAC QALSEPATVT
QWGERLHALL QVFFLAEGER DEYLLMQLQD LRDSWLEVCE TVGLQDPLPL AVVREAWLSG
LDQGKLSQRF LAGSVNFCTL MPMRAIPFRV VCLLGMNDGD YPRAQQPLDF DLMASDYRPG
DRSRREDDRY LLLEALLSAR DQLYVSWVGR SIRDNSERPA SVLIGQLRDH IATGWHLAGM
QQGQPAEPGE QLLHALTQEH PLQPFSARYF QKGSPLFSFA HEWQLLHQHG ETDEQGEPGL
PPYLGDEALS LTQLNDFLRH PVRHFFSQRL KVYFEALEAP TPDEEPFVLD TLQRYGASES
LLGAALAEPD NAEQALRAQA RRLQACGLLP LAGFGESLQS ELIEPLPDLL QRHQQLLQRW
PQLVEGALPV HFEHAQHRLE GWLGRVFQAQ DQSLLSITTV PNTISAGRNN LKWHRLIAPW
VTHLVACAAG YPYNSALVAS DLTLLLAPLP QAQAAQLLGD LLVARQAAMN APLPVAAKTA
FAWLAQDDAD KALAAAARAY EGDERTSFGE RSESIALARQ FRDFAALTAD ETFEGWCETL
YRPLFTAPWQ TLGNPEKGA