Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputGB1_4672 |
Symbol | |
ID | 5872480 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida GB-1 |
Kingdom | Bacteria |
Replicon accession | NC_010322 |
Strand | - |
Start bp | 5212908 |
End bp | 5216387 |
Gene Length | 3480 bp |
Protein Length | 1159 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 641549805 |
Product | exodeoxyribonuclease V, gamma subunit |
Protein accession | YP_001670894 |
Protein GI | 167035663 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG1330] Exonuclease V gamma subunit |
TIGRFAM ID | [TIGR01450] exodeoxyribonuclease V, gamma subunit |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 0.000155523 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
| |
Sequence |
Gene sequence | ATGGCTACTA CCACTCTCCA CCCCGGCTTC ATGATCGTCC ACGGCAACCG CCTCGACGAC CTGCGCAGCC TGGTAGTGAG CTGGATGCGT CGCTATCCCC TGGCGCCGCT GGAAAACGAA ATAGCCTTGG TGCAAAGCAA TGGCATCGCC CAATGGCTCA AGTTGGCCCT GGCCGAAGAC CCGCTGGAAG ATGACCTGGG CGGCTGTGGC ATCGCCGCCG CAATCGATGT GCAACTACCC GGTAGCTTCA TGTGGCAGCT ATACCGCAGC GTGCTGGGCC GTGACGAAAT TCCCGAAGTT TCCCTGCTCG ACAAGGCCCC ACTCACGTGG CGCCTGATGC GCCTGTTACC CGCCCTGATC GAACGCCCCC ATTTCGAGCC GCTGCGGCGC TTCCTTACCG ACGACAGCGA CCTGCGCAAG CGCTACCAGC TAGCCGAACG GCTAGCGGAC CTATTCGACC AGTACCAGGT CTACCGCGCC GACTGGCTCA AGGACTGGGC CGCAGGCGAG CATGTCCTCA ACACCGCCCG TGGCGAGCGC AAAGCGCTGC CGCCGGGCAA CCGTTGGCAA GCCGAGTTGT GGCGAGCATT ACTGGAAGAT GTTGGCGAGC AGGGTATGGC GCAGAGCCGT GCCGGGGTTC ACCAACGCTT CATCGAGCGG ATCAATAGCC TGGAGCAGGC ACCTGCAGGG CTGCCACCGC GGGTGATCGT GTTTGGCATC TCCTCACTAC CCGCCCAGGC CCTGGAAGCA CTGGCCGGTC TGGCGCGTTT CAGCCAGGTG CTGTTGTGCG TTCATAACCC ATGCCGCCAC CACTGGGCCG ACATCGTTGC CGACAAGGAC CTGTTACGCC ACCAGTACAA ACGCCAGCAA CGCAAGCAGG GCATGCCCCT GCAACTGGAT GACCAGTCGT TGCACCAGCA TGCCCATCCG TTGCTGGCCG CCTGGGGCAA ACAAGGCCGC GACTACATCA ACCTGCTCGA CAGCTACGAC GACCCGGGCA GCTACCAGGG CGTGTTCAGC GATGGCCGCA TCGACCTGTT CAGTGACGGT TCGCCCACCA CGCTGCTCAA TCAACTGCAG GACGACATCC TGGAGTTGCG CCCGCTCACC GAAACCCGTG AGCTGTGGCC GCCCGTGGAC ACTGCAAAGG ATCGCTCGAT CCGCTTCCAC ATCGCCCATA GCCCGCAACG TGAAGTGGAA ATCCTCCACG ACCAACTGTT GGCCCGCTTC AGCGCCGACG CAACTTTGCG CCCGCGTGAC GTGATCGTCA TGCTACCGGC CATCGACACT TACGCGCCGC ACATCCGCGC TGTCTTTGGC CAGTTGCAGC GCAACGACCC GCGCTACATC CCGTTCACCC TGACCGACCA GGGCCAGCGC GGCCGCGAAC CTTTGCTGAT CGCTCTTGAG CACTTGCTCA AACTGCCAGA CAGCCGTTTC GCGGTCAGCG AAGTGCTTGA CCTGCTGGAC GTGCCGGCAG TGCGCGCTCG CTTTGGTATT CGCGAAAACG ACCTGCCCAC GCTACACCGC TGGATCGAGG GGGCCGGCAT ACGCTGGGGC CTCAACGCCG AGCAGCGGGC CAGTCTTGGT TTGCCCGCCG GGCTCGAACA GAACAGTTGG CGCTTCGGCC TGCGGCGTAT GCTGTTGGGC TATGCAGTGG GTGTGGGCGT GGCCTGTGAC GGCATTGAAC CCTACGATGA AATCGGTGGC CTGGACGCTG CACTGATCGG CCCACTGGTC GCGCTGCTCG ATGCGCTCGA AGTCGCCTGT CAGGCCTTGT CCGAGCCCGC CACCGTCACG CAGTGGGGCG AGCGCCTGCA TGCTTTGCTA CAGGTGTTTT TCCTGGCCGA GGGCGAGCGT GACGAGTACC TGCTGATGCA ACTGCAAGAT CTGCGCGATA GCTGGCTTGA AGTGTGCGAG ACCGTTGGCC TGCAAGACCC GTTGCCGCTG GCCGTGGTGC GTGAAGCCTG GCTGTCGGGC CTCGATCAGG GCAAGCTGTC ACAGCGCTTC TTAGCCGGCT CGGTGAACTT CTGCACCCTG ATGCCCATGC GCGCCATCCC GTTCCGGGTG GTTTGCCTGC TGGGCATGAA CGATGGCGAC TACCCGCGCG CCCAGCAACC GCTGGACTTC GACTTGATGG CCAGCGACTA CCGCCCCGGT GACCGCTCTC GCCGCGAAGA CGACCGTTAC CTGCTGCTGG AGGCGCTGTT GTCGGCACGC GACCAGCTGT ATGTCAGTTG GGTCGGGCGC AGTATCCGTG ACAATAGCGA ACGCCCGGCC TCGGTACTGA TCGGCCAGTT GCGCGATCAC ATCGCCACGG GATGGCATCT GGCCGGCATG CAGCAGGGGC AGCCAGCCGA ACCGGGCGAG CAACTGCTGC ACGCTCTGAC TCAGGAGCAT CCCTTGCAGC CGTTTAGCGC ACGCTACTTC CAGAAAGGCA GCCCGTTGTT CAGCTTTGCC CATGAATGGC AACTGCTGCA CCAGCATGGC GAGACAGATG AACAGGGCGA GCCCGGCCTG CCGCCATACC TAGGTGATGA AGCCCTGAGC CTGACCCAAC TGAATGACTT TCTGCGCCAT CCGGTACGGC ACTTTTTCAG CCAGCGCTTG AAGGTGTACT TTGAAGCGCT GGAAGCACCA ACCCCGGACG AAGAACCCTT CGTCCTCGAT ACGCTGCAAC GCTATGGCGC CAGTGAAAGC CTGCTTGGCG CAGCCTTGGC CGAGCCGGAC AATGCCGAAC AGGCCTTGCG TGCCCAGGCC CGGCGCCTGC AGGCCTGCGG TTTGCTGCCG CTGGCCGGTT TCGGAGAATC GCTGCAAAGC GAGTTGATCG AACCGCTACC CGATTTGTTG CAACGTCACC AACAGCTGCT GCAACGCTGG CCTCAGCTGG TCGAGGGCGC TTTGCCGGTG CATTTCGAGC ACGCTCAGCA CCGTCTCGAA GGCTGGTTGG GCCGGGTGTT CCAGGCTCAG GACCAGAGCC TGCTCAGCAT CACCACGGTA CCCAACACAA TCAGCGCCGG GCGCAACAAC CTCAAGTGGC ATCGTCTGAT CGCACCTTGG GTTACGCACC TGGTCGCCTG TGCGGCCGGC TATCCCTACA ACAGTGCACT GGTAGCCAGC GACCTGACCC TGTTACTTGC ACCGCTACCG CAAGCACAGG CTGCTCAGCT GTTGGGCGAC CTGCTGGTGG CCCGTCAGGC GGCGATGAAT GCGCCGCTGC CCGTCGCGGC CAAGACCGCG TTCGCCTGGC TGGCCCAGGA CGACGCCGAC AAGGCTTTGG CCGCCGCAGC CCGTGCCTAT GAAGGCGACG AGCGCACCAG CTTTGGCGAG CGAAGTGAGA GCATCGCTCT GGCCCGCCAG TTCCGCGACT TTGCTGCACT GACGGCTGAC GAAACCTTTG AAGGCTGGTG CGAAACCTTG TACCGCCCGT TGTTCACCGC CCCTTGGCAG ACCCTGGGCA ACCCGGAGAA AGGCGCATGA
|
Protein sequence | MATTTLHPGF MIVHGNRLDD LRSLVVSWMR RYPLAPLENE IALVQSNGIA QWLKLALAED PLEDDLGGCG IAAAIDVQLP GSFMWQLYRS VLGRDEIPEV SLLDKAPLTW RLMRLLPALI ERPHFEPLRR FLTDDSDLRK RYQLAERLAD LFDQYQVYRA DWLKDWAAGE HVLNTARGER KALPPGNRWQ AELWRALLED VGEQGMAQSR AGVHQRFIER INSLEQAPAG LPPRVIVFGI SSLPAQALEA LAGLARFSQV LLCVHNPCRH HWADIVADKD LLRHQYKRQQ RKQGMPLQLD DQSLHQHAHP LLAAWGKQGR DYINLLDSYD DPGSYQGVFS DGRIDLFSDG SPTTLLNQLQ DDILELRPLT ETRELWPPVD TAKDRSIRFH IAHSPQREVE ILHDQLLARF SADATLRPRD VIVMLPAIDT YAPHIRAVFG QLQRNDPRYI PFTLTDQGQR GREPLLIALE HLLKLPDSRF AVSEVLDLLD VPAVRARFGI RENDLPTLHR WIEGAGIRWG LNAEQRASLG LPAGLEQNSW RFGLRRMLLG YAVGVGVACD GIEPYDEIGG LDAALIGPLV ALLDALEVAC QALSEPATVT QWGERLHALL QVFFLAEGER DEYLLMQLQD LRDSWLEVCE TVGLQDPLPL AVVREAWLSG LDQGKLSQRF LAGSVNFCTL MPMRAIPFRV VCLLGMNDGD YPRAQQPLDF DLMASDYRPG DRSRREDDRY LLLEALLSAR DQLYVSWVGR SIRDNSERPA SVLIGQLRDH IATGWHLAGM QQGQPAEPGE QLLHALTQEH PLQPFSARYF QKGSPLFSFA HEWQLLHQHG ETDEQGEPGL PPYLGDEALS LTQLNDFLRH PVRHFFSQRL KVYFEALEAP TPDEEPFVLD TLQRYGASES LLGAALAEPD NAEQALRAQA RRLQACGLLP LAGFGESLQS ELIEPLPDLL QRHQQLLQRW PQLVEGALPV HFEHAQHRLE GWLGRVFQAQ DQSLLSITTV PNTISAGRNN LKWHRLIAPW VTHLVACAAG YPYNSALVAS DLTLLLAPLP QAQAAQLLGD LLVARQAAMN APLPVAAKTA FAWLAQDDAD KALAAAARAY EGDERTSFGE RSESIALARQ FRDFAALTAD ETFEGWCETL YRPLFTAPWQ TLGNPEKGA
|
| |