| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_4613 |
|---|
| Symbol | |
|---|
| ID | 5872421 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | + |
|---|
| Start bp | 5152695 |
|---|
| End bp | 5153123 |
|---|
| Gene Length | 429 bp |
|---|
| Protein Length | 142 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 641549746 |
|---|
| Product | putative PAS/PAC sensor protein |
|---|
| Protein accession | YP_001670835 |
|---|
| Protein GI | 167035604 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 0.444342 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 47 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCAACG CGCAATTGCT GCAATCGATG GTCGATGCGT CCAATGACGG GATCGTGGTC
GCCGAACAGG AAGGCGACGA CACTATCCTG ATCTACGTGA ACGCCGCCTT CGAACGCCTG
ACTGGCTACA GCCGCGACGA AGTCCTCTAT CAGGATTGTC GCTTTCTGCA GGCCGACGAC
CGTGACCAGC TTGGCCGCGC GCGCATCCGC AAGGCCCTGG CCGAAGGCCG CCCGTGCCGC
GAAGTGCTGC GCAACTACCG CAAGGATGGC AGCGCCTTCT GGAACGAACT GTCGATCACG
CCGGTGAGAA GCGACGCCGA CCAGCGCACC TACTTCATCG GCATCCAGAA AGACGTCAGC
CGCCAGGTCG AACTGGAACG GGAACTGGCC AAGATGTGCG CTCGTCCGAA AACCGACGAA
CGCGCCTGA
|
|---|
| Protein sequence | MINAQLLQSM VDASNDGIVV AEQEGDDTIL IYVNAAFERL TGYSRDEVLY QDCRFLQADD
RDQLGRARIR KALAEGRPCR EVLRNYRKDG SAFWNELSIT PVRSDADQRT YFIGIQKDVS
RQVELERELA KMCARPKTDE RA
|
|---|
| |