Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputGB1_4587 |
Symbol | |
ID | 5872395 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida GB-1 |
Kingdom | Bacteria |
Replicon accession | NC_010322 |
Strand | + |
Start bp | 5128369 |
End bp | 5129244 |
Gene Length | 876 bp |
Protein Length | 291 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 641549720 |
Product | AraC family transcriptional regulator |
Protein accession | YP_001670809 |
Protein GI | 167035578 |
COG category | [K] Transcription |
COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 0.213128 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 52 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACGCCAC TCACCCAGTT GCAAGTGTTC AACGCCATGC ATGCCTCGCC CCACGCCCGG CTGGAGCTGA GCGCGCACCT GGGCGACGGG CTGGCGGCGG CGTTGTGGAG CAACCGTGAC GATGCTCGTG ATTACCAGGC ACCGACCCAT CACACCCTGT CGTGCTACAT CGCCGACGGC ACCGGCACCT TCCGCCGCCA ACGCCCGGCC GACAAGGGCG CACCCGGCAA GCTGTGCGTG ATGCCGGCCG GGCAGGAATC GAACTGGGTG GTCAATGGCG CGATCCGGCT GGCACACCTG TATGTCAGCG AGGCGCAGTT CGCCCTGGGC TGCGTGCGCC TGCTCGACCG TGAGCCACGG GAGCTGCAAC TGCAGGAGGC GACCTTTCTG GACGATCCAC AGCAGGCGGC ACGCTTTCGC CAACTGATCC AGCTGGACTG GGACGAGCCC GGCGAACGCC TGCTGGCCAG CAGCCTGGCA CACGAAATCG TCGACCATGC GCTGCTCAAC CAGGTCGGGC TGCGCCAAGG CCTGCGCCTG AAAGGTGGGC TGGCGCCGAA CCTGCGCCGG CAGTTGGTCG AGTACATCGA AGCGCACCTG GACCAGCCGA TTACCCTGGG TGAACTGGCC TTGCGCTGCA ACTTGTCCGA ATACCACTTC GCACGCATGT TCCGCGCCAG TTTCGGGTTA CCGCCGCACC AGTACTTGCT GGCCAGGCGG CTGCAGCGGG CTTGCGAGTT GTTGCGACTG GGGGAAATGC CGCTGGGCGA AATTGCCCTG TTGTGCGGGT TTGCCAGTGC CAGCCATTTC AGTAACCGCT TCCGGCAGGC CCTTGGCGCA ACGCCTGGGG AATATCGCTC GGCCATTCGC GGCTAA
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Protein sequence | MTPLTQLQVF NAMHASPHAR LELSAHLGDG LAAALWSNRD DARDYQAPTH HTLSCYIADG TGTFRRQRPA DKGAPGKLCV MPAGQESNWV VNGAIRLAHL YVSEAQFALG CVRLLDREPR ELQLQEATFL DDPQQAARFR QLIQLDWDEP GERLLASSLA HEIVDHALLN QVGLRQGLRL KGGLAPNLRR QLVEYIEAHL DQPITLGELA LRCNLSEYHF ARMFRASFGL PPHQYLLARR LQRACELLRL GEMPLGEIAL LCGFASASHF SNRFRQALGA TPGEYRSAIR G
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