| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_4564 |
|---|
| Symbol | |
|---|
| ID | 5872372 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | + |
|---|
| Start bp | 5100698 |
|---|
| End bp | 5102248 |
|---|
| Gene Length | 1551 bp |
|---|
| Protein Length | 516 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 641549697 |
|---|
| Product | Sel1 domain-containing protein |
|---|
| Protein accession | YP_001670786 |
|---|
| Protein GI | 167035555 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0790] FOG: TPR repeat, SEL1 subfamily |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 0.392578 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 40 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTAGCA TGCCGCCGTT GCGAGGGCTT TGCCCTCGAT CGCGACACAA GGCCGCTCCT
ACAGGGTCCG AGTCGTTCTC CCATCTGTCG CCTGGCACTC AACCTGTAGG AGCGGCCTTG
CGTCGCGATC GAGCGCGCAG CGCTCGCCCA TTCGCATGGT GCACACTCGC CCTGGCCATT
ACCCTGGCCG GCTGTGCCGG CCTGCCTGAC CAGCGCCTGG CCAACGAAGC CATGAAGCGC
GGCGACACGG CTTTGGCCGA GCGCAACTAC AAGGCCCTGG CCGACCTGGG CTACAGCGAA
GCACAAGTAG GCCTGGCAGA CATCAAGGTG GCCACCCGCG ACCCATCGCA AATCAAGGAA
GCCGAGGCCA CCTACCGCGC AGCGGCGGCC ACTTCGCCCC GTGCCCAGGC GCGCCTTGGC
CGCCTGCTGG TGGCCAAGCC CGACAGCACC CAGGCCGAAC GCGAAGAAGC CGAAACCCTG
CTCAAGCAGG CTGCGAAGCA GGGCGAAAGC AATACCCTGA TTCCGCTGGC AATGCTCTAC
CTCAGCTACC CGCAGAGCTT CCCCAAGGTC AATGCGCAGC AGCAGATCGA CCAATGGCGC
GCCGCCGGCA ACCCGGAAGC GGGCCTGGCC CAAGTGCTGC TGTACCGCAC CCAGGGCACC
TACGACCAGC ACCTGGGCGA CGTGGAGAAG ATCTGCAAGG CCGCCCTGAA CAGCACCGAC
ATCTGCTACG TCGAACTGGC CACCGTGTAC CAGAAGCGTG GCCAGGCCGA CCAGCAAGCC
GCCCTGCTCG CCCAGTTGAA GTCCGCCTAC GCCCGTGGCG CGGTGCCGGC CACTCGGGTC
GACAGTGTTG CCCGGGTGCT GGCCGACCGC AGCCTTGGCC AGACCGACGA GAAAACCGCC
AAGGACCTGC TTGAGCAGGT GGCCCCCGCC AACCCGGCAT CCTGGGTCAG CCTGGCGCAA
CTGCTGTACG ACTTCCCCGA ACTGGGCGAT ACCGACCAGC TAATGGCTTA CATCGACAAG
GGCCGCGAGG CCGAACAACC ACGCGCCGAA CTGTTGCTGG GCCGCCTGTA CTACGAAGGC
AAAACCCTGC CAGCCGACGC GAAAAAAGCC GAGCAGCACC TGCAAGCCGC CGCCGACGCT
GGCGAAATCA GCGCCCATTA CTACCTGGGC CAGCTGTACC GCCGTGGCTA CCTGGGCAAT
GTCGAGCCGC AGAAAGCCGT CGATCACCTG CTGGCCGCCG CCCGTGGTGG GCAGAACAGC
GCCGACTATG CCCTGGCCCA GCTGTTCAGC GAAGGCCACG GCATCCGCCC GCAACCGGGC
AACGCCTGGG TGTTCGCCCA GCTGTCGCAG GCCAACCCGA CGCCGCAATC GAGCGAACTG
CTGCAGCAAC TCGACCAGCA ACTCACGCCT GACCAGCGCA GCCAGGCCCA GCAACTGTTG
GGCCAGGAAA AGCGCGCACG CGGCAGCATG GCGCAGGGCG CGAACAGCAC CCTGGCCCTC
GAAGCCCTGC AAGACGACGA AAAAGAAGTA GACGGTGAGG ACTCGCTATG A
|
|---|
| Protein sequence | MTSMPPLRGL CPRSRHKAAP TGSESFSHLS PGTQPVGAAL RRDRARSARP FAWCTLALAI
TLAGCAGLPD QRLANEAMKR GDTALAERNY KALADLGYSE AQVGLADIKV ATRDPSQIKE
AEATYRAAAA TSPRAQARLG RLLVAKPDST QAEREEAETL LKQAAKQGES NTLIPLAMLY
LSYPQSFPKV NAQQQIDQWR AAGNPEAGLA QVLLYRTQGT YDQHLGDVEK ICKAALNSTD
ICYVELATVY QKRGQADQQA ALLAQLKSAY ARGAVPATRV DSVARVLADR SLGQTDEKTA
KDLLEQVAPA NPASWVSLAQ LLYDFPELGD TDQLMAYIDK GREAEQPRAE LLLGRLYYEG
KTLPADAKKA EQHLQAAADA GEISAHYYLG QLYRRGYLGN VEPQKAVDHL LAAARGGQNS
ADYALAQLFS EGHGIRPQPG NAWVFAQLSQ ANPTPQSSEL LQQLDQQLTP DQRSQAQQLL
GQEKRARGSM AQGANSTLAL EALQDDEKEV DGEDSL
|
|---|
| |