| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_4499 |
|---|
| Symbol | |
|---|
| ID | 5872306 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | + |
|---|
| Start bp | 5032224 |
|---|
| End bp | 5034248 |
|---|
| Gene Length | 2025 bp |
|---|
| Protein Length | 674 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 641549632 |
|---|
| Product | multi-sensor signal transduction histidine kinase |
|---|
| Protein accession | YP_001670721 |
|---|
| Protein GI | 167035490 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5000] Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.278807 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 0.486911 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCTTGC GCCAACGCCT GGAAAACCTG CCGGTCGGGC AGAAGCTGCT GGCGGCCCTG
CTGGTATTGC TGGTAACCAT CCTGCTGGTG GCCAACCTTA CCTTCATCAG CGCCGCCTAC
TGGATCACCC AGGAAAGCAT GGCACCGCAG GCTCTGCAGA CCATAGGCCG GCTGGTAGCC
AACCCGCAGC TTGCGGCCCG CGCCGGCGAT ACCCCCGACA CCGCCAGCGC CCTGCTCAAG
GAGCTGGACA GCTACACACC GCTGCGCGCT GCCGCTGTCT ACGGGGGTGA TGGTCGCCTG
CTTGCACAAC TGCAGCATGG CGAGCCGCTG GCCCTGCCCA AGCGTTTTCG CAACATCGAC
GGCTGGCGCC TGATGGAATT TCGAAGCACT CAGCTGATTC GCATTCCGCG CGATGCCAAC
CCACCGGCGC ACCTGCTGCT GGTGGCCAGC AGCGAACTGC CCACGGCCTT CTACACCGGC
ACCCTCAGCG CCAGCCTGGG CATTCTGGTG TTCAGTATCC TGCTGTGGAT CGTCATCGCC
CGGCAGATCA AACGCCTGAT CACCCAGCCG ATCAACCAGC TGGAAGAACT CAGCCGCCAG
GTCACCCGCG AAGAGAGCTA CGCCTTGCGC GCCCGGCGCG GCAACGACGA TGAAATCGGC
AGCCTGGCCG AGGCTTTCAA TACCATGCTG TCGCGCATCG AGGCCCGCGA GCATCAGCTC
AAGCGCGCCC GCGACGAATT CCAGGATGCC TATGACCAGG CTCAGGGCCT GGCCGAGGAG
ACCCGCCACA CCAACCGCAA GCTGGAACTG GAAGTGCAGG TGCGCAGCAA GATCGAGAAA
AAGCTCACCG GCTTCCAGAA CTACCTCAAC AGCATCATCG ACTCGATGCC CTCGGCACTG
ATCGCCCTCG ACGAACAACT TTACGTGACC CAGTGGAACC ACGAAGCCAC GGTGCTTTCC
GGCACGCCGC TGGACGAAGC ACTGAACCAG CCAGTGTTCA TTGCCTTTGA ACCGCTCAAG
CCGTTCCTGC CACAGCTGAA GGAAACCGTG GAAAAACACC GGGTGGCGAA GATCGAGCGG
GTTACCTGGC CCAAAGACGA CGACCTGCGC CATTACGCCC TGACCTTCTA CCCGCTGACC
GGCGGCGGCG GGCGCGGTGT GGTCATCCGT ATCGACGACA TCACCCAGCG CCTGTCACTG
GAAGAAATGA TGGTGCAATC GGAGAAAATG CTTTCGGTCG GTGGCCTGGC TGCCGGCATG
GCCCACGAAA TCAACAACCC GCTGGGCGCC ATCCTGCACA ACGTGCAAAA CATACGCCGA
CGCCTGTCGA CCGACCTGCC GCGCAACCAG GAACAGGCCC AAGAGCTGGG CATCGACCTG
GCCACGGTCA ACCGCTACCT GGACAGCCGC GAGGTGCCGC AACTGCTCGA CGGCATCGCG
CAAGCCGGCG CCCGGGCGGC GAAAATCGTA ACCCACATGC TCAGCTTCAG CCGCCGCAGC
AACCGCCAGC TGGTGCCGTG CGAGCTGCCG GCACTGATCG ACCAGGCACT GGAAATTGCT
GGGAATGACT TCGACCTGGC CATCGGTTTC GACTTCAAGG GCCAGGCCAT CGTGCGCCAG
TTCGACCCCA ACCTGGGGCC AGTACCCTGC ACGGCCAACG AGCTGGAACA AGTGCTGCTC
AACTTGCTGA AGAACGCCGC CCAGGCCATC CACCAGCGCC CGCAGCCGAG TGAGCCCGGG
CGCATCACCC TGCGTACCCG GCTGAACCCG CCATGGGCGG AGATCCAGGT CGAGGACAAC
GGCGTCGGCA TGCCCGAGGC GGTGCGCAAG CGCACCTTCG AGCCGTTCTT CACCACCAAG
GAAATCGGCC AGGGCACCGG GCTTGGCCTG TCGGTCTCGT ACTTCATCAT CACCAACAAC
CATAAGGGGC AGATGGAAGT GCAGTCCACG CCCGGCCAGG GCACTTGCTT TACCCTGCGC
CTGCCCCTCG GCCAGCCGGC GACGCCGGCC AACACGGAGA AGTGA
|
|---|
| Protein sequence | MTLRQRLENL PVGQKLLAAL LVLLVTILLV ANLTFISAAY WITQESMAPQ ALQTIGRLVA
NPQLAARAGD TPDTASALLK ELDSYTPLRA AAVYGGDGRL LAQLQHGEPL ALPKRFRNID
GWRLMEFRST QLIRIPRDAN PPAHLLLVAS SELPTAFYTG TLSASLGILV FSILLWIVIA
RQIKRLITQP INQLEELSRQ VTREESYALR ARRGNDDEIG SLAEAFNTML SRIEAREHQL
KRARDEFQDA YDQAQGLAEE TRHTNRKLEL EVQVRSKIEK KLTGFQNYLN SIIDSMPSAL
IALDEQLYVT QWNHEATVLS GTPLDEALNQ PVFIAFEPLK PFLPQLKETV EKHRVAKIER
VTWPKDDDLR HYALTFYPLT GGGGRGVVIR IDDITQRLSL EEMMVQSEKM LSVGGLAAGM
AHEINNPLGA ILHNVQNIRR RLSTDLPRNQ EQAQELGIDL ATVNRYLDSR EVPQLLDGIA
QAGARAAKIV THMLSFSRRS NRQLVPCELP ALIDQALEIA GNDFDLAIGF DFKGQAIVRQ
FDPNLGPVPC TANELEQVLL NLLKNAAQAI HQRPQPSEPG RITLRTRLNP PWAEIQVEDN
GVGMPEAVRK RTFEPFFTTK EIGQGTGLGL SVSYFIITNN HKGQMEVQST PGQGTCFTLR
LPLGQPATPA NTEK
|
|---|
| |