| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_4400 |
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| Symbol | |
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| ID | 5872207 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | + |
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| Start bp | 4925290 |
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| End bp | 4926771 |
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| Gene Length | 1482 bp |
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| Protein Length | 493 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 641549534 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_001670624 |
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| Protein GI | 167035393 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 31 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 40 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCATTAC GTTCCGCTCT GTTCTCGCAG CGCTCGCTGA TCTTTACCCT GTTGCTGCTG
CTTGCCTGCG GCTTCCTCGC CACTTCACTG CTCAGCTACT TCGCCTCGCG CAGCGCCATC
CGCGACGGCA TCGTCAATAC CGAATTGCCA CTGACCTCCG ACACGGTCTA CTCGGAAATC
CAGAAAGACC TGATTCGCCC GGTGCTGATT GCCTCGATGA TGGCCCAGGA CACCTTCCTG
CGCGACTGGG TGCTGTCCGG CGAGCAGGAT ACCGGGCGCA TGACCCGCTA CCTGGGCGAA
GTCATGGGCA AGCAGGACAC CTTCACCTCA TTTTTCGTGT CCGACCGCAC GCTGACCTAT
TACCAGGCCA AGGGCGTACT CAAACATGTC GAGCCGGGCA CCTGGCGCGA TGCGTGGTAT
TTCCGCCTGC GTGACCTCAA GGCCCCCTAT GAGATCAATG TCGACCTGGA CATGGCCAAC
CACGACAGCT TGACCGTGTT CATCAACTAC CAGGTGCATG ACTACCAACA GCGCTTCATC
GGCGCCGCAG GCGTAGGGCT GAGCGTATCG TCGGTGGTCA AGCTGATCGA CCAGTATCAA
CGCCGCTACC AGCGGGCGGT GCTGTTCACC GATGCCAAAG GCAAGGTGCT GCTGACCGGC
TCCGAAGGCG GCCCGCATGG CTTGCGGGTC GGCCAGTCAC TGCGCGACAA CCCCGAACTG
AATGACGTGC TGGCCGAGCA GCGAGTGCCA GGCGAAGGCA GCCACGAGTA CCGTGACAGC
GAAACCCAAA GCCACTTTCT CAACGTGCGC CACCTGCCCG AACTGGACTG GTACCTGCTG
GTGGACAAAC GCGAAACCGG CGTCCTCGAC CGCATTCGTC ACTCCCTGTA CCTGAACCTG
GCGATCTGCG CCATGATCAC CTTGGTGGTG CTGGCGCTGG TGCATGCCAT GGTCCGCCGC
CACCAGGCCA GCACCGAAGC CTTGGCTACC CTCGACAGCC TCACCGGCCT GCCCAACCGG
CGCAGCTTCG ACCTGCTCGC CGCCCAGGCA CTGCACGAAG CCCAGCGCGA CAGTGGCCCG
CTGGTGGCCT TGCTGATCGA CCTGGACCAC TTCAAGGCAC TGAACGACAC CCACGGCCAC
CTGGCAGGCG ACGAAGTGCT GCGCCAATTC GCCAATGTGC TGCAAGGCAG CCTGCGCCAG
TCGGATATAC TGTGCCGCTG GGGCGGTGAG GAATTCATCG TACTGCTGCG TGAAGCCGAA
GGCCGGCAGG CGGTCGAGGT GGCGGAAAAG ATCCGCCGAC GCACCGAACA ACTGACCTTC
AGCTACGACG ACCAGCCGTT GCGCCTGACT ACCAGCATCG GGCTGAGCAG CCTGCAACCG
GAGGATACCC TGCACGCCCT GCTGACCCGC GCCGACCGTG CGCTTTATCG TGCCAAGCAG
GCAGGCCGCA ACCGTGTCTG CAGTGATGCC AACCATGAAT GA
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| Protein sequence | MPLRSALFSQ RSLIFTLLLL LACGFLATSL LSYFASRSAI RDGIVNTELP LTSDTVYSEI
QKDLIRPVLI ASMMAQDTFL RDWVLSGEQD TGRMTRYLGE VMGKQDTFTS FFVSDRTLTY
YQAKGVLKHV EPGTWRDAWY FRLRDLKAPY EINVDLDMAN HDSLTVFINY QVHDYQQRFI
GAAGVGLSVS SVVKLIDQYQ RRYQRAVLFT DAKGKVLLTG SEGGPHGLRV GQSLRDNPEL
NDVLAEQRVP GEGSHEYRDS ETQSHFLNVR HLPELDWYLL VDKRETGVLD RIRHSLYLNL
AICAMITLVV LALVHAMVRR HQASTEALAT LDSLTGLPNR RSFDLLAAQA LHEAQRDSGP
LVALLIDLDH FKALNDTHGH LAGDEVLRQF ANVLQGSLRQ SDILCRWGGE EFIVLLREAE
GRQAVEVAEK IRRRTEQLTF SYDDQPLRLT TSIGLSSLQP EDTLHALLTR ADRALYRAKQ
AGRNRVCSDA NHE
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