Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputGB1_4392 |
Symbol | |
ID | 5872199 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida GB-1 |
Kingdom | Bacteria |
Replicon accession | NC_010322 |
Strand | + |
Start bp | 4917097 |
End bp | 4918386 |
Gene Length | 1290 bp |
Protein Length | 429 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 641549526 |
Product | outer membrane porin |
Protein accession | YP_001670616 |
Protein GI | 167035385 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 38 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 34 |
Fosmid unclonability p-value | 0.644568 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCTGTCAT CGCAGCCGCA GGCGTTCGCG CCTACCCGTT CCTTTGCCGC ACGCCCCTCT GCCATCGCCA GCGCCCTCGC GCTTGCCGGT GTCGCCCCGA TGAGCCAGGC CGCCTTCTTC GAAGACAGCA CGGCCACCTT CGAAACCCGC AACATGTACT TCAACCGCGA CTTCCGCGAC GGCACCAGCG CGCAGCAGTC CAAGCGCGAC GAATGGGCCC AGGGCTTCAT CCTCAACTTC GAGTCCGGCT ACACCGATGG CACCGTGGGC TTTGGCCTGG ACGCATTGGG CATGCTCGGC ATCAAGCTCG ACTCCAGCCC CGACCGTACC GACACTGGCC TGCTGCCGAC CCACGATGAC GGCAAGGCTG CCGATGAGTA TTCCAAGCTG GGCCTGACCG GCAAGGTGAA GATCTCCCAG ACCGAGCTCA AGATCGGCAC CCTGATCCCC GAGCTGCCAA CGCTGCAGCC CAACGACGGG CGTATCCTGC CGCAAACCTT CGAGGGCGGC CTGCTTACTT CCAAGGAGAT CAAGGGCCTG ACCTTCACCG GTGGCCGCCT GGACAAGGCC AAGGACCGCA ACGACACCAA CTGGGAAGAC TTGGCGCTGA ACAACAAGAA CGGCCGCTTC GGTGGCACCT TCAGCGCCGA CAACCTGGCC CTGGGCGGGC TCGACTACCA GTTCACCGAC CGTATCACCG GCAGCTACCA CTTCGCCCAG CTCGACGATA TCTACCGCCA GCACTTCATC GGCATGGTCG CCACCCAGCC ATGGGGCCCA GGCACCTTGG GCGCCGACCT GCGCCTGGCG GTGAGCGACG ACGCCGGCGC CGCCAAGGCC GGCAACATCG ACAACACCAC CTTCAACGGC ATGCTCAGCT ACGCCTTGGG CGGGCACAAG GTCAGCGCCG CCTGGCAGCA ACTGTCTGGC GACAGCGCCT TCCCCTATGT CGATGGCGCC GACCCGTACC TGGTCAACTT CGTCCAGATC AACGACTTCG CTGGTGCCGA CGAACGCTCC TGGCAGGCGC GCTACGACTA CAACTTCGCC GCGCTCGGCG TGCCCGGCCT GACCTTCATG ACCCGCTACA TCAGCGGTGA CAACGTCAGC CGTGCGGCCG GCGGTGAAGG CAAAGAGTGG GAACGCAACA CGGAACTTAA GTACGTGGTA CAAAGCGGCC CGTTGAAGAA CGTCGCCGTG CGCCTGCGCA ACGCCACCTT CCGCTCCAAC TTCGCCCGCG ACGCCGACGA AGTGAGGCTG TTGGTCAGCT ACAGCGTGGC GCTGTGGTAA
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Protein sequence | MLSSQPQAFA PTRSFAARPS AIASALALAG VAPMSQAAFF EDSTATFETR NMYFNRDFRD GTSAQQSKRD EWAQGFILNF ESGYTDGTVG FGLDALGMLG IKLDSSPDRT DTGLLPTHDD GKAADEYSKL GLTGKVKISQ TELKIGTLIP ELPTLQPNDG RILPQTFEGG LLTSKEIKGL TFTGGRLDKA KDRNDTNWED LALNNKNGRF GGTFSADNLA LGGLDYQFTD RITGSYHFAQ LDDIYRQHFI GMVATQPWGP GTLGADLRLA VSDDAGAAKA GNIDNTTFNG MLSYALGGHK VSAAWQQLSG DSAFPYVDGA DPYLVNFVQI NDFAGADERS WQARYDYNFA ALGVPGLTFM TRYISGDNVS RAAGGEGKEW ERNTELKYVV QSGPLKNVAV RLRNATFRSN FARDADEVRL LVSYSVALW
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