| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_4168 |
|---|
| Symbol | |
|---|
| ID | 5871967 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | + |
|---|
| Start bp | 4662495 |
|---|
| End bp | 4663325 |
|---|
| Gene Length | 831 bp |
|---|
| Protein Length | 276 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 641549294 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001670392 |
|---|
| Protein GI | 167035161 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.000000709743 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 0.130078 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTTGGTA CGCCGACACG CCTCTCTCCG CGAGCCCAAG TTAGACACCG ACTTTTTGCA
CTGTCCGGAA ATAATTGCGC ACTGCCTGGT TGCGCATCAA AACTAGTTGA CGACTACGGA
AACATCATTG GGCAGATATG TCATATTGAA GCTGCTGCTC CAGGAGGAGA GCGCTTTAAC
CCCAATAGCA ACAATGAGGC CCGGCGCGAT TTTAGTAACT TGATGCTGTT GTGTTATAGC
TGTCACATAA AAACAAATGA CGTAGTTGAA TATCCAACAG AAAGACTTCG TCAAATCAAA
GCGACACATG AACAGTGGGC CACACTTCAA CCTGTCCTTC AAACAAATAT AGAAAAATTT
GTTGATGCAA GTCTTTGGCA AGAGTTTAAG CTCCCCGAAA ACTATAGAAA CATCAGCAAT
GAGCCTCACG ATGAAGATTT TTATACGCAT GCAAAAAGCC TCCTCACTAC AATAGCTCAA
CTCCCAATGT CTACACGAAG CTTCTATGCT CATGCATTCA TTAAAGCTTT GCGTGGAGAT
CTTTGGTTAG TTGGAAACCT TGACGGGCTT CGGGTAGCGC TAAATACCAC ATACCAGCAA
ATTTCGACTC ACATCAGCAT TTTGGAGGAA AAGCATCTGT TTGGGCTGGT GGAAGAGGCC
GACGACTGGA TGACCCTTCC GTTCCGTGGC ACACGATATG GCCTTTGCGG GCTAGACAGA
GACGACAATG GCATATATCT ACTTTATTTA ATTCATCAGC ACTTTTCAGG CGACCCACAA
GCCATACTAA GCATTTTCGA AGATTTGGAT TTTACACTGT TAGATGCCTA G
|
|---|
| Protein sequence | MFGTPTRLSP RAQVRHRLFA LSGNNCALPG CASKLVDDYG NIIGQICHIE AAAPGGERFN
PNSNNEARRD FSNLMLLCYS CHIKTNDVVE YPTERLRQIK ATHEQWATLQ PVLQTNIEKF
VDASLWQEFK LPENYRNISN EPHDEDFYTH AKSLLTTIAQ LPMSTRSFYA HAFIKALRGD
LWLVGNLDGL RVALNTTYQQ ISTHISILEE KHLFGLVEEA DDWMTLPFRG TRYGLCGLDR
DDNGIYLLYL IHQHFSGDPQ AILSIFEDLD FTLLDA
|
|---|
| |