| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_3888 |
|---|
| Symbol | |
|---|
| ID | 5871682 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | - |
|---|
| Start bp | 4334285 |
|---|
| End bp | 4335481 |
|---|
| Gene Length | 1197 bp |
|---|
| Protein Length | 398 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 641549010 |
|---|
| Product | cytochrome c-type biogenesis protein CcmI |
|---|
| Protein accession | YP_001670114 |
|---|
| Protein GI | 167034883 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG4235] Cytochrome c biogenesis factor |
|---|
| TIGRFAM ID | [TIGR03142] cytochrome c-type biogenesis protein CcmI |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 45 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATTGAAT TCTGGCTTAG CGCGGGCCTG CTGCTGCTCG CTGCCCTCAG CTTTTTGCTG
ATCCCGATCC TGCGTGGCCG TCGTCGCCAG CAGGAAGAAG ACCGCACGGC CCTGAACGTG
GCCCTGTACC AGGAGCGTAT TGCCGAACTG GCTGCCCAGC AGGCTGCCGG TGTGCTCGAC
GAGGCGCAGT TGACCAAGGG CCGTGACGAG GCAGCCCGCG AGCTGCTGGC CGACACCGAG
GGCGCCGAGG CCCCACGCCA GGGCCATCTT GGCAAGGCCC TGCCGCTGCT GGCTGCCGTG
CTGGTACCGC TGATGGCGCT GGGGTTGTAC CTGCACTTCG GTGCAGCCGA CAAGGTGGCG
CTGACCCAGG AATTCGCCGA GGCGCCGAAG TCGATGGAAG AAATGACCAC ACGCCTGGAG
CGTGTGGTGC AGGCTCAGCC GGATTCGGCC GAGGCCCTGT ATTTCCTCGG TCGGGCCTAC
ATGGCCGAGC AGCGCCCGGC CGATGCCGCG CGTACCTTCG AGCGAGCAGT GGCGCTGGCG
GGTCGCCAGC CCGAACTGCT CGGGCAGTGG GCCCAGGCCT TGTACTTCGC CGCCGACAAG
CAGTGGAGCC CGCAGGTACA GGCGCTGACG GACGAAGCGC TGAAGGCCGA CCCCAATGAG
GTCACCAGCC TGGGCCTGCG CGGTATCGCT GCCTTCGAAG GTGAGCGCTA TCAGGAAGCC
ATAGACTACT GGAAGCGCTT GCTGGCGCAG TTGCCGGAGG GGGATACATC GCGCGCGGCC
CTGCAGGGCG GTATCGACCG CGCCGCCGAG CGGCTGGGCG CAGCGCCAGC ACAGGCTGCC
GAGCCTGCGC CTGTGGCGGC TCGCCTGAAA GTACGTGTGG AACTGGCGGC GGCGCTTAAG
GACAAGGTCA AGCCGGACGA CACGGTGTTC ATTTTCGCGC GCGCCAGCAA TGGCCCACCG
ATGCCGCTGG CAGCCAAGCG GGTGACCGTG GCGCAGTTGC CGATCGAAGT GGAATTGTCG
GATGCTGACG CAATGATGCC GCAGATGAAA CTGTCGCAAT TTGCCGAAGT CCAACTGGTT
GCACGTGTTT CGCGCGCTGG CCAGCCTACT CACGGCGAGT GGATTGGCCA GGGCGTACCG
CTGCCAAGCG CTACTCAGGC CACCCAGCGC CTGACCATCG ACAGCCCCGA CCAGTAA
|
|---|
| Protein sequence | MIEFWLSAGL LLLAALSFLL IPILRGRRRQ QEEDRTALNV ALYQERIAEL AAQQAAGVLD
EAQLTKGRDE AARELLADTE GAEAPRQGHL GKALPLLAAV LVPLMALGLY LHFGAADKVA
LTQEFAEAPK SMEEMTTRLE RVVQAQPDSA EALYFLGRAY MAEQRPADAA RTFERAVALA
GRQPELLGQW AQALYFAADK QWSPQVQALT DEALKADPNE VTSLGLRGIA AFEGERYQEA
IDYWKRLLAQ LPEGDTSRAA LQGGIDRAAE RLGAAPAQAA EPAPVAARLK VRVELAAALK
DKVKPDDTVF IFARASNGPP MPLAAKRVTV AQLPIEVELS DADAMMPQMK LSQFAEVQLV
ARVSRAGQPT HGEWIGQGVP LPSATQATQR LTIDSPDQ
|
|---|
| |