| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_3302 |
|---|
| Symbol | |
|---|
| ID | 5871087 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | + |
|---|
| Start bp | 3701819 |
|---|
| End bp | 3706288 |
|---|
| Gene Length | 4470 bp |
|---|
| Protein Length | 1489 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 641548418 |
|---|
| Product | leucine-rich repeat-containing protein |
|---|
| Protein accession | YP_001669530 |
|---|
| Protein GI | 167034299 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG4886] Leucine-rich repeat (LRR) protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 34 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCACA CCCCTTACCA CCACGCGCAA ATGACACAGT CCCTGCCCGG CTGGAGCAAG
GCGCTGCACA GCGAACACGC CAGTCGCATC CTGGCGCGCT TGCGCAAGGA CTATCAGGAT
GCCGAAGGCA ATGCTTACCC TTGGTACAGC CAGGCAGACC CACTCACCCG TCAGGCCGTG
CAGCGCGCCA TCGCCACTCG CGACGCCAGC AGCAGGGCCC TGCAGGCTGC GCTGAGCGAC
TTGCAGGGCG TCACTGCGTT CTGCGCCCCA CTGCTGCAAA AGCAGCTGGG CATCGACACC
CCGGTCACTC AGGCGCAATA CGTTTATCAA GCCACCGCCG TCAGGCAACC GGACGGGATA
CCGAGTGGCC CTGTAGTACC AGGTGAGCTG GGCGAGATCG TACCCAAAGG TGACCCGCAG
TATCGCAGCC TGCTCGAAGC GGCCCTGCAC AATTTCGAAG GAACTGCCGA TACCACCCGT
TTCAGCCGCC TGCAGCACGG CCGCCAGGAC ATCAGGCCAA TCGCAGGGAT GTCAGTGGCG
GGGTTCATCG ACCAGTGCCG TGCGCTTGAC CTGGGCCAGC GCTACCAGCA GCACCTTGAC
CAGGTCTACG GCGGTGCAAA CAAAGCCGAG CTGCAGTCAC TGGCCATCAC CGCACGGCGT
GGCGAGTTCC GCGTGCAAAC CCGTATTGCG GCCTGCAAAG GCCACCTCAG CCACGCCAGC
GCTTTCGCGC TGCATGGCCT CGGTGCCGAA AACGCCGACC CCACCTATCA GGGCCGCCCC
CTGCGTTGCT GGCAGCTGCA ATTGTTTGGC ATCCCGATCC ACGAACTGCT GTTCATCGCG
CCCACGCAAA ACCGCACCCA TGACCCGGTA TTTCTCTACA ACCCGGCAGA TGGCGATGCG
CTCAGGGAAT TTGCCTCGCT GGGCGATGCA CGCAAGTACC TGCGCCAGCA ACTGCTGCAG
GACGACTACC GCAAGCGCTT CGTCGCCCTG GCGCTGCAAT CGCAACAGGC AGCGTTGAAC
CAGCAGCTTG AGCGCGCCCT TTACAGCAAC GCCGACCAGG GAGCGCAGCG GCAACCTCGC
AAGTCGATAC ATCTGGAGTC CATCGACAGC ACCTTGCCAG ATGTCCCTTG GGCACAGCTG
GAATCCCGCC ATCTTGTACG TCTGCGGGCC GATGCTCGCC AGGTGGCGGT TCCCACAGAA
GATGTTGACG CCAGGGTACG CTTGCAGAAC ATCGAATACT GGCTGGACCT GGGCATGACC
GTGCTGAATG TCGCCGCCAT GGTCGTACCC TGCCTGAACC CGATCATGCT GACCATCGGC
GCCGCGCAGA TCATGGGCAG CGTGTTCGAG GGCATTTCAG CGTGGGAGGA AGGTGACAAT
GAAGCGGCTG TGGCCCAGCT TGAGTCGGTG TTGCTGAACA TTGTCACAGT GGCTGCCATG
GGCGGCGCCA CCATAGCGCT GAAGGCCTCA GGATTCGTCG ATGCCATGCA GAGCATCGTC
AAGGATGGCA ACGACTACCT GTGGAACCCC ACGTTGAAGG ACCGTGCAAG CCCGGTATCG
ATTGCCGAAC ACCTTGAGCC CGACGCACAA GGCCGTTACA CGGTAGACGG GCGCCACTAC
ATTCGCATCG ATGGTGTTGT CTACGAACAG GTGCATGAGC GGGGCCAGTG GCGCATCCCC
CACCCACTGG CCCCACAGGC TTATCGGCCG GTAGTGCGCG AATACGGTGC AGGCGCATGG
CGCGCAGAAC ATGAAACGCC GCTGGAATGG GATGACGTGT ATTTGTTGCG CCGCTTAGGG
CCAATCAGTG ACGGCCTGAC TGACGAAGCG CTGAAGGCAG CGCTAGCGTG CTCCGGTGTG
CAAGGCGACG AACTTCGCCA AACCCAGGTT GCCGCACAGC AACCGCCTGC CTTGCTGGCC
GATGCACTCG ACCGCCTTAG CGCACGGGAT CAGCTCAGCC CTGCCGATCG AGCCCACCCC
CTGGCCAGGC AGTTTCCGGA GCTGCCGGGG CGCGCCATCC GGCAGCTCAT GGCCAGGACC
TGCGCCAGTG AGCGCCTACG CCTGGCCCAA GGCAGGGTGC CTTTGCGCGT CGCCGAAGAG
GCCCGGCGGC TTCAGGCACA TGCCCGCTTG AGCAGGGCCT TGCTGGGGCT GTATCGCCCT
GACCTGGCCA CTGCCGACAG TGAAGTGCTG GATGCCGCAC TCAAGGCCGA ACACCCTGAG
CTTGATCCTC ACCAACGGTA TGAGGTGGCG ATTGCCAACC GGGCGCATGC GGCACGGCTG
ATCGGGCAGC AACCCATCAG GCCGGGCTAC CGTTCGCCGA TGCGCCTGGC CGATGGCCGC
CTTGGCTACC CACTCAGTGG AAGGCTGCCT TGGACCAATA CGGCAAATAG ACGATTGCGG
GCACTGTACC CCAGCCTGAG CTCAAGCGAG CGCAATACTT TGCTCGGCCA ACTGCGCCAG
CGCGGTGACG TAGCGGCGCA GATCAGGGCG CTGGAAACCG AGCGCAACAG CCTCGACAAC
ACACTGCGTG ACTGGACGAG CCAGGGTAAC GAGAACCAGC GCAACGCACG CAACGTGGTG
CGAGACCTGT TCAATGCCGC CTGGCGCCGT GACGACCCCG ACAGCCTGAC ACTGCAAGGC
CTGGAAGTCG ACGCCCTGCC ATCACTGCCG GCGCGCTTCG ATCACATCAC CACCCTGAAC
ATTCGCGCTA TCGGCATCCG TCAGATACCT GCAGACTTCT TCCAGAGTTT CCCCTCGTTG
CGCGCCCTGC GCCTGGCGCA AAGCCCAGAG CTCGATTTCG ACGGCCTGTT CCGTGCACTG
GCGTCCACCC CGCAACTGGA AGAGCTGGAC CTGGGCAACA ACCAGTTGGG CAGCCTGACC
GACGGGATGC GCCAACACCT GACCGGCCTG ACCCGCCTGC GCCGGCTGAG CCTGCGTCTG
AACAGGCTGC AGCTAAGCGA AGCCGACCTG CAGACCCTTG CACAGCTTCC CCTCGAATAC
ATTGATCTGG AGTACAACCA CATTACGCTG AGTGATGCCT TGGCAGCACG ATTCACCGGC
CTGCACCAAT TGCGCGGCCT ACGCTTGACC AACAACCCGC TGGGTCAGGC CCCCGACCTG
ACCGGTCTGA CCCGCCTGAC CAACCTGCAA CTGCGCAACT GCAGCCTGCA TGAGTGGCCG
CGCGGCCTCA CATCACTGAT GGCGCAGGCC GACCTGCAAT TGCGCCACCT CAGCCTGAGC
TACAACCCGA TCGCCGAGGT GCCGGACCTT AACCAGTTGC TGACCAGCCC CTTTGCCGAT
GCCCTGCGTG CAAACCGCGA TGCCTTGTGG GACTTCAACG AAAACGACCT GGATGCCAAC
AGCAACCGCC GGCTACGCGC GGCCGGCGTC GAAGTGCACA GCGACGATCA ACTGTCGGAT
ATCAGCGAGG AGTTCTGGCT CGTGGATGCC AGCCCAGAAC AGACACAGCT CTGGAACGAA
TTGTTCGAGG GCGATGCAAA CCGACATTTA CGCGATGTCA TCGAACGCGT GACTCGCTCG
CAGCAAGCCG AGCAGGATTT GCGCGGGCTG AGTAACCAGG TCTGGCGGTT GCTCGAACAG
GCCGGGCAGG ATGAGGCGCT GCGCACCCAT CTGGACAATG TCGCACAAGA CTACCCGCCT
ACCTGTGGCG ACGCCGGTAC CGATGCGTTC AGCGCCCTCG AAATTGAAGC ACAGGTGTTC
AGCCAACTGG CCCAGGAAGC AGAGCGCCCC GCCTACCTGT TCAACTTTTT CAGAACCCTC
TATCGCCGGG AAATGGTCAA CGCGCTGGGC GAACGGATCC AGCTCGCTCG ACTGGCGCGC
CAGGCACGCT TGCTGGAGCT GGAGCGGCTA CCTGCCCAGG CACAGCCCGC AAGGCTTGAT
GTGCCTGCGC TGGACAGCCT CGACGAGCTG AGTGACAACG CCCTGCTCAC TGGCGGGACG
GACCTGATCG AAATACGCCT GGCCTTGCGC CAGTCACTGG CAGTGCCACT CGACTTTCCA
GAAACCAGCC AAGGCATGCT GTATCGCCGC GAAGCGATGA TTTCGACACG GGTGGAAAGC
AATGTCGAAC ACGCCGTCCG GCAATTCGAC CAAACCGCCA CAGAGCGCAG GGCATGGGTT
GCGCGGCAGC CCAGCTGGCA ACGTTACCTT GCCCAGCACT TCGCCAGCCA GTTCGCCACG
CTCGATGAGC GGTGGTACCA AGGCATGCAG TACCTGGACT ATTGCCTGGA CGCTGAAAAC
GAAGCCGTCA CTTCGCTGGA TGGTACGGTA TTGCAAGCCA TCGGCGAGGC GCTGCCCGCG
CCAGCGTTGG ACGGCAGTGG TCAATTGCAA AGAATGGACC TTGGCAGCCA GGCTTACGAC
CTGGCCAGCC GGCGCCTGAA CGCCGGGCGT GAGCAGCAGC GCGAAGCGTT GTTCGAAACG
CTTACCCGCC TGCAAGACCC GAACAGATAG
|
|---|
| Protein sequence | MSHTPYHHAQ MTQSLPGWSK ALHSEHASRI LARLRKDYQD AEGNAYPWYS QADPLTRQAV
QRAIATRDAS SRALQAALSD LQGVTAFCAP LLQKQLGIDT PVTQAQYVYQ ATAVRQPDGI
PSGPVVPGEL GEIVPKGDPQ YRSLLEAALH NFEGTADTTR FSRLQHGRQD IRPIAGMSVA
GFIDQCRALD LGQRYQQHLD QVYGGANKAE LQSLAITARR GEFRVQTRIA ACKGHLSHAS
AFALHGLGAE NADPTYQGRP LRCWQLQLFG IPIHELLFIA PTQNRTHDPV FLYNPADGDA
LREFASLGDA RKYLRQQLLQ DDYRKRFVAL ALQSQQAALN QQLERALYSN ADQGAQRQPR
KSIHLESIDS TLPDVPWAQL ESRHLVRLRA DARQVAVPTE DVDARVRLQN IEYWLDLGMT
VLNVAAMVVP CLNPIMLTIG AAQIMGSVFE GISAWEEGDN EAAVAQLESV LLNIVTVAAM
GGATIALKAS GFVDAMQSIV KDGNDYLWNP TLKDRASPVS IAEHLEPDAQ GRYTVDGRHY
IRIDGVVYEQ VHERGQWRIP HPLAPQAYRP VVREYGAGAW RAEHETPLEW DDVYLLRRLG
PISDGLTDEA LKAALACSGV QGDELRQTQV AAQQPPALLA DALDRLSARD QLSPADRAHP
LARQFPELPG RAIRQLMART CASERLRLAQ GRVPLRVAEE ARRLQAHARL SRALLGLYRP
DLATADSEVL DAALKAEHPE LDPHQRYEVA IANRAHAARL IGQQPIRPGY RSPMRLADGR
LGYPLSGRLP WTNTANRRLR ALYPSLSSSE RNTLLGQLRQ RGDVAAQIRA LETERNSLDN
TLRDWTSQGN ENQRNARNVV RDLFNAAWRR DDPDSLTLQG LEVDALPSLP ARFDHITTLN
IRAIGIRQIP ADFFQSFPSL RALRLAQSPE LDFDGLFRAL ASTPQLEELD LGNNQLGSLT
DGMRQHLTGL TRLRRLSLRL NRLQLSEADL QTLAQLPLEY IDLEYNHITL SDALAARFTG
LHQLRGLRLT NNPLGQAPDL TGLTRLTNLQ LRNCSLHEWP RGLTSLMAQA DLQLRHLSLS
YNPIAEVPDL NQLLTSPFAD ALRANRDALW DFNENDLDAN SNRRLRAAGV EVHSDDQLSD
ISEEFWLVDA SPEQTQLWNE LFEGDANRHL RDVIERVTRS QQAEQDLRGL SNQVWRLLEQ
AGQDEALRTH LDNVAQDYPP TCGDAGTDAF SALEIEAQVF SQLAQEAERP AYLFNFFRTL
YRREMVNALG ERIQLARLAR QARLLELERL PAQAQPARLD VPALDSLDEL SDNALLTGGT
DLIEIRLALR QSLAVPLDFP ETSQGMLYRR EAMISTRVES NVEHAVRQFD QTATERRAWV
ARQPSWQRYL AQHFASQFAT LDERWYQGMQ YLDYCLDAEN EAVTSLDGTV LQAIGEALPA
PALDGSGQLQ RMDLGSQAYD LASRRLNAGR EQQREALFET LTRLQDPNR
|
|---|
| |