| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_3222 |
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| Symbol | |
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| ID | 5871007 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | - |
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| Start bp | 3610137 |
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| End bp | 3611600 |
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| Gene Length | 1464 bp |
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| Protein Length | 487 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 641548338 |
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| Product | type VI secretion-associated protein |
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| Protein accession | YP_001669450 |
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| Protein GI | 167034219 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | [TIGR03362] type VI secretion-associated protein, VC_A0119 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 32 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 48 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCGGTGG TAGCGCAAGT ATCGGAGCGC GAGATCACTC GCTTGCTAGC GCCGATTGAT
CCGGCCGTCC CGGCTGGTTT GTTCGATGTC GAGGACGAAA CCTACCAGGC TATCGACCAG
GAGATGGTCA AGCTGGGTGG GCTACAGGAC GCCTCCATCG ACTGGGCTTA CATCGAAGAG
GCGTCGCGTC AGTACCTGAG CCAGCAATGC AAGCACTTGC GAATCGTCGC ACACCTGAGT
GCTGCATGGC TGCGTGGCGG ATGTTGGGAG CGCTGGGGTT TCACCTTGGC GTTGCTGGCC
GGCATGATCG AGTGTTACTG GGAGCACGCT CACCCCAAGC CAGGGCCAAA GGGTTTTCTG
GTCAAGCGCA AGCTGGTTGG TCTGATGATC AATCGCTTGG CCGAGGCGCT ACCGCGTCTT
GATCGCTTTA CCTACACACC GACTCATGCG GCGGCAGCGC AGGCTGCGTT GAAACGCCTG
CAACAACAGG ATGCGGTTCA GCTGGAGGGA GCCGCTCTGG GCGAACTTGA GCGCCTGCTA
CGCAAGCACA CGGAACTTGC CAATGGCGTC GGCGAGGCTG CCGCGCCCGA GGCGCCGGCT
GCAAGCGTAA AGCCGGCGCC ACTGACCGAT GTCATCGCAG CGCCAATGCC GCGCGTGACG
ATGGGTAATG AGCGTGAGAC ACGACGGGCA GTGCTGGCTA TGGCCGAGCT CATCAACCAG
CAGGACCCTT ACGACCCTAC CGGGTACCAG CTACGGCGTT TCGGATTGTG GGGGCACATT
CAGGCGGCCC CTCAAGCCAC TCAGGGCAAC CGCACGGAAT TGATGTCGGT TCCGCTGGAT
ATCACGCGGG TCTATGAAGA AGCGATTGCC AGCACAGCGA TCGACCCCGC ATTACTTCAG
CGCATTGAAA AGAGCGTGAC GGCGTGCCCG TTCTGGGTTC GTGGCAGCTT TCTAGCTGCG
ACGGTCGCCT TGCGGCTGGC GATGGGTGAA GTGGCCGAAG CCATCCGTAG CGCCACTGCT
CGTTTTGTGC AGCGCATGCC CGCGCTGCAG CAACTGTGCT TCAGCGACGG CATGGTGTTT
GTCGACGACC AAAGCCTGGC CTGGCTCAAG GGCACGCAAG GGCCTTCTGC CCAAGGATCA
ACCCCACAAG AGTTTGGCGG CCTGCGCGAG GAACTGATCA GTCAGCTGGA AACCGCTGGC
GTAGAAGCGG TGCTGCTAAG GCTACAAGCG CTGCAAGCGG ACTTCCGAGC TCCCCGTGAG
CGCTGCCACA CCACAGTGAT CGCTGCCGAT TTACTGGCCG CGCGGGGCGT GTCCTGGCTG
GCCCAGGACT TGTGCGCCAG CGTTGCCAGA ACGATGCAGA AAACCACTGC CAGTGCGTGG
GAACCGGCGG TTTTCCAGCG CCTTCAGCAG TACGCGGGAT CCCCTGCGCT GGCTGATCAA
AACAAGGAAC AGGAGCCTCG ATGA
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| Protein sequence | MPVVAQVSER EITRLLAPID PAVPAGLFDV EDETYQAIDQ EMVKLGGLQD ASIDWAYIEE
ASRQYLSQQC KHLRIVAHLS AAWLRGGCWE RWGFTLALLA GMIECYWEHA HPKPGPKGFL
VKRKLVGLMI NRLAEALPRL DRFTYTPTHA AAAQAALKRL QQQDAVQLEG AALGELERLL
RKHTELANGV GEAAAPEAPA ASVKPAPLTD VIAAPMPRVT MGNERETRRA VLAMAELINQ
QDPYDPTGYQ LRRFGLWGHI QAAPQATQGN RTELMSVPLD ITRVYEEAIA STAIDPALLQ
RIEKSVTACP FWVRGSFLAA TVALRLAMGE VAEAIRSATA RFVQRMPALQ QLCFSDGMVF
VDDQSLAWLK GTQGPSAQGS TPQEFGGLRE ELISQLETAG VEAVLLRLQA LQADFRAPRE
RCHTTVIAAD LLAARGVSWL AQDLCASVAR TMQKTTASAW EPAVFQRLQQ YAGSPALADQ
NKEQEPR
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