| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_3161 |
|---|
| Symbol | |
|---|
| ID | 5870946 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | - |
|---|
| Start bp | 3535880 |
|---|
| End bp | 3538570 |
|---|
| Gene Length | 2691 bp |
|---|
| Protein Length | 896 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 641548277 |
|---|
| Product | cystathionine beta-lyase |
|---|
| Protein accession | YP_001669389 |
|---|
| Protein GI | 167034158 |
|---|
| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0607] Rhodanese-related sulfurtransferase
[COG0626] Cystathionine beta-lyases/cystathionine gamma-synthases |
|---|
| TIGRFAM ID | [TIGR01324] cystathionine beta-lyase, bacterial |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 41 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTCCCA GCATCACCCC CGCGCTACTG CATGACTGGC TGTTCGACGG CCACGAAATC
GCCCTGTTCG ACCTGCGCGA GCACGGCCAG TACGGCGAAG CTCACCTGTT CTACGCCGTG
AACCTGCCGT ACAGCCGGCT GGAAATCGAG GCCCCGCGCC TGGCGCCCAA CCCGCTGGTG
CGTCTGGTGG TCTACGACGC AACCGGCGGC GAACTGGCGC AGCGCGGCGT GCAGCGCCTG
CAGGCGCTGG GCTACAAGGC CGTGCATTGG CTCGAAGGCG GTAGCCAGGG CTGGCAGGCC
GCTGGCTTTG AATTGTTCGC CGGTGTGCAC CTGCCCTCCA AGGCCTTTGG CGAACTGGTC
GAACATGCCT GCCACACCCC ACGCATCAGC GCCCAGGAGC TGGCCGAATG GCAACGCCAG
GGCAAGCCGC TGGTACTGCT CGATGGCCGG CCACTGGACG AGTTCGCCAA GATGAACATC
CCCGGCGCCA CCTGCTGCCC CAACGGTGAA CTGGGCTACC GCCTGGAGGA CCTGGTGCAT
GACCCCCAAA CACCGGTGGT GATCAACTGC GCAGGGCGTA CCCGCAGCAT CATCGGCGCG
CAAACCCTGA TCAACCTCGG CATCGACAAC CCGGTCTATG CCCTGGAGAA CGGCACCCAG
GGCTGGTACC TGGTCGACCT GCCACTGGAG CACGGCGGGC GACGCGGGTA TCCGCCGCAT
AGCGGCCAGG CACTGGGGCG GCAACGGGCA CGCGCCACGG GGTTGGCGCA CAAGGCCGGG
GTGCAGTGGG TGGCAGCGGC GCAGGTACAG GCCTGGCAGC AGGACGCACA ACGCACGCTG
TTCCTGTGCG ATGTGCGCAC CCCGGAGGAG TTCACCGCTG GCAGCCTGCC CGGCGCGCAG
CATTGCCCAG GCGGGCAACT GGTGCAGGGC ACCGACTTGT ACATTGGCGT GCGCAAGGCG
CGCGTGGTGC TGTTCGATGG CGACGGCGTG CGTGCCCCGG TGGTGGCCAG CTGGCTGCGG
CAGATGGGGC ATGATGCGTA CGTCCTCGAA GGCGGCCTGG GCAGTGGCTT GGCATTGCCG
GCACAGCCGC CGCTGGCGGT AACCTTGGCC GAAGCCAGCG CTGCAGAACT GGAGGGCGCC
TTGCTGCTGG ACCTGCGCCC GAGCACGGCC TACCGCCAGC GCCACCTGCG CGGCGCGCAG
TGGGCGATCC GCCCAGGGCT GGCCGAGCAG GTGCGTGAGC AGTCTGGGCG CCTGGTGTTC
ATTGCCGACG ACCCTCGCGT CGCCGAGTTG GCTGCCAGCG AACTGCCAGA TACACAACGT
CGCGCTGCGC GCCTGTTCCC CCAGGCGTTG CTGGCCGAGT GGCCGCAGGT CGCGGACGAC
ACCTCGTTGC CAGACGCCGC CTGCATCGAT TTCCTGTTCT TCGTCCATGA CCGACACGCC
GGCAACAAGG AGGCGGCACG CCGCTACCTG GCCTGGGAGA CCGGGCTGAT CGCACAGATG
AGCGCCGCCG AGGTTGCCAG CTTCACCCCC CTGACGCACA GCGACCCGGT CGCTACACGG
CTGGTGCATG CCGGGCGTGG CGAATCGGGC CAAGGGGCCC ACGGCGTCAA CCCACCGGTC
AGCCGCCTGA GCACCGTGCT GTTCGACAGC GTCGCCGAAC AGCGTGAAGC GCGCAGCCAT
CGGGACCAGC AACGGGTGCT CAGCTACGGT GCCCGTGGCA ACCCCACGGC CTTTGCCCTC
GAAGACCTGG TCAGCGAACT GGAAGGCGGC TACCGCTGCA AGTTGTTCGT TACCGGGCTG
CAAGCCATCA CTCAGGCCTT TCTCGCCTAC TTGCGCCCCG GCGACCATGT GCTGCTCAGC
GATGGGGTGT ATGGCCCGGT GCGGCGCCTG GCGCGCGAGC TGCTGCAGCC GTTCGGTGTG
CAAGTCAGCT ATTTCGCCGC CGATGGCCAC GGCCTGGAGG CCGCGTTGCG CCCGAACACC
CGCATGGTCT ACAGCGAGAG CCCGAGTTCG TTGCTGTACG AGCTCATTGA CCTGCCGGCC
ATGGCTGCGT TGTGCAAGCC GCGCGGGATC CTGCTGGCGG TCGACAACAC CTGGGGTTCG
GGTTACTTGT ACCAGCCGTT GGCATTGGGC GCAGACATCT CGGTGATGGC CCTGACCAAG
TACGTGGGCG GGCACAGCGA CGTGATGATG GGCAGCGTGT GCACCACCCA AGAGGCCTTC
GCCGCGTTGT CGCGCAGCAG CGATACCTGC GGCTGCACGG TCAGCCCGGA CGATGCTTGG
TTGGTGCTGC GTGGGGCGCG CAGCCTGGCC AGCCGCATGG CCGTGCACGC GCGCCAGGGC
CTGGAGATCG CCCAGTGGCT CCAAGCTCGC GAGGATGTGG CGCGGGTGTA TCACCCGGCG
TTGCCGGAGC ACCCGGGGCA TGCCCTGTGG CGCCGCGACT TCAAGGGCAG CAATGGCCTG
CTCAGCCTCG AACTGGCCGA CGCCAGCCTG GGCCGGGCAG AAGCGTTCAT CGATCGCCTG
CGCCTGTTCG GCATCGGTGC CTCCTGGGGT GGCTACGAGA GCCTGGTGAC CCTGGCCGAG
CTGGGTGAGC GCAGCTTCGC AACCCCGGTG CGTGGTGCTT TGGTGCGCCT GCACGTGGGC
CTGGAAGAGG TCGGCTCGCT ACAGCGCGAC CTCGACCAGG CGCTGCGCTG A
|
|---|
| Protein sequence | MTPSITPALL HDWLFDGHEI ALFDLREHGQ YGEAHLFYAV NLPYSRLEIE APRLAPNPLV
RLVVYDATGG ELAQRGVQRL QALGYKAVHW LEGGSQGWQA AGFELFAGVH LPSKAFGELV
EHACHTPRIS AQELAEWQRQ GKPLVLLDGR PLDEFAKMNI PGATCCPNGE LGYRLEDLVH
DPQTPVVINC AGRTRSIIGA QTLINLGIDN PVYALENGTQ GWYLVDLPLE HGGRRGYPPH
SGQALGRQRA RATGLAHKAG VQWVAAAQVQ AWQQDAQRTL FLCDVRTPEE FTAGSLPGAQ
HCPGGQLVQG TDLYIGVRKA RVVLFDGDGV RAPVVASWLR QMGHDAYVLE GGLGSGLALP
AQPPLAVTLA EASAAELEGA LLLDLRPSTA YRQRHLRGAQ WAIRPGLAEQ VREQSGRLVF
IADDPRVAEL AASELPDTQR RAARLFPQAL LAEWPQVADD TSLPDAACID FLFFVHDRHA
GNKEAARRYL AWETGLIAQM SAAEVASFTP LTHSDPVATR LVHAGRGESG QGAHGVNPPV
SRLSTVLFDS VAEQREARSH RDQQRVLSYG ARGNPTAFAL EDLVSELEGG YRCKLFVTGL
QAITQAFLAY LRPGDHVLLS DGVYGPVRRL ARELLQPFGV QVSYFAADGH GLEAALRPNT
RMVYSESPSS LLYELIDLPA MAALCKPRGI LLAVDNTWGS GYLYQPLALG ADISVMALTK
YVGGHSDVMM GSVCTTQEAF AALSRSSDTC GCTVSPDDAW LVLRGARSLA SRMAVHARQG
LEIAQWLQAR EDVARVYHPA LPEHPGHALW RRDFKGSNGL LSLELADASL GRAEAFIDRL
RLFGIGASWG GYESLVTLAE LGERSFATPV RGALVRLHVG LEEVGSLQRD LDQALR
|
|---|
| |