| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_3115 |
|---|
| Symbol | |
|---|
| ID | 5870900 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | + |
|---|
| Start bp | 3485523 |
|---|
| End bp | 3486554 |
|---|
| Gene Length | 1032 bp |
|---|
| Protein Length | 343 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 641548231 |
|---|
| Product | transcriptional factor MdcH |
|---|
| Protein accession | YP_001669343 |
|---|
| Protein GI | 167034112 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2378] Predicted transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.020795 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 40 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATTCTCT TGCCTTCAGC CAAGACCCAT ACCGCGCTGA GCCGCCAGTG GGAGCTGCTG
CGCCAGCTGC CAAAACGCGC CCCCGGCAGC ACGGTGACTG AACTGCTGGC CCGCCTGACG
GATGCGGGCT ACGTCATCAG CAGACGCAGC ATCGAGCGCG ATCTGCATGA CCTTTCCCTG
GTGTTTCCGT TGCAGCGCAA CGAAGGGGGA ACGCCATCGG GCTGGTACTG GAAGCCAGGT
GTGAGTGTCG AGCTGCAAGG CATCACGTTG ACCGAAGCCG TCAGCCTGGC GCTGGTCGAG
GACGCCGTTC GCCCCTTGTT GCCAGGGAGC ATGCTGAGTG TTCTGGAACC ACGCTTCGAG
CACGCACGGC AAAAGCTCAA GGGGTTAGGC GACGGCAACC CAGCCGCCCG CTGGCCAGAC
AAAGTGGCCA GCGTGCGGCC GGACTTCAAC ATGCAAGCGC CGCAGGTTCA TGCAGAAACG
CTTGAAGCCC TGCAGCACGC CTTGATCAGC GAACAGCAGA TCCGCTGCCA GTACTATTCG
GCGCACAATG ACAAGCAAAG CGACTTGACA CTCAACCCGC TGGCGATTGT GCAGCGCGGC
TTGATCACTT ACCTCATCGC CACGGCGGCG CCCTACACCG ATGTCCGTCA ATTCGCGGTG
CACCGCTTCC GAGAGGTGAC CGTACTCGAC TCGCCGTGCC AGGGGCTGGA GTCGTTCGAA
TTGCACAGCT ACCTCGCCAC GGATGCCCTG CAATTTGGCA AACCCGAAAA GATCTGCCTG
GAAGCTTGGG TGAGCGAACG CCAGGCACGC CTGATTCGCG AAACCCCACT GAGCACGGAC
ATGACGCTCG AACCGTGGGA GCAAGGCTTC CGCCTTCAGG CAACGGTCAA CAATACCTGG
CAGCTGCACT GGTGGCTGTT GTCGCTCGGT GACGCGGTGG TGGTGCATGC GCCAGCACAA
TTGCGCCAAC AGATCGGCGA TACGCTGCGC CGCGCCGCCG CCGCGTACGC GCCTGAACAG
TGCCTGGCCT GA
|
|---|
| Protein sequence | MILLPSAKTH TALSRQWELL RQLPKRAPGS TVTELLARLT DAGYVISRRS IERDLHDLSL
VFPLQRNEGG TPSGWYWKPG VSVELQGITL TEAVSLALVE DAVRPLLPGS MLSVLEPRFE
HARQKLKGLG DGNPAARWPD KVASVRPDFN MQAPQVHAET LEALQHALIS EQQIRCQYYS
AHNDKQSDLT LNPLAIVQRG LITYLIATAA PYTDVRQFAV HRFREVTVLD SPCQGLESFE
LHSYLATDAL QFGKPEKICL EAWVSERQAR LIRETPLSTD MTLEPWEQGF RLQATVNNTW
QLHWWLLSLG DAVVVHAPAQ LRQQIGDTLR RAAAAYAPEQ CLA
|
|---|
| |