Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputGB1_3059 |
Symbol | |
ID | 5870844 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida GB-1 |
Kingdom | Bacteria |
Replicon accession | NC_010322 |
Strand | - |
Start bp | 3414526 |
End bp | 3416841 |
Gene Length | 2316 bp |
Protein Length | 771 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 641548175 |
Product | TPR repeat-containing protein |
Protein accession | YP_001669287 |
Protein GI | 167034056 |
COG category | [R] General function prediction only |
COG ID | [COG0457] FOG: TPR repeat |
TIGRFAM ID | [TIGR01905] doubled CXXCH domain |
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Plasmid Coverage information |
Num covering plasmid clones | 27 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 54 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGGATGGC GTGCACAGGT GATGCAGGGC GGTTGGGTGG CGCTCTGCCT GGGGGTCCTA TTACTCATTT CAAGTGGTGT CAGCCTTGGC GCGGCAGCTG TTGGTGAAGG CCAACTACCT GCCTTGGCCA AGGACCGCGA GGGCTACGCC GATGCCGACA GTTGCCAGGG CTGCCATGCC CAGCAGGCCG GGCAGTGGCA GCATTCCGAC CATGCCTGGG CGCTGCGCGA CGCCAGCGCG GCGAATGTGC TGGGCGACTT CAACGATGTG CACTATGACC AGGACGGGGT CAAGGCACAC TTCTATCGCA AGGGTGGCGG GTACTTCGTC AACATCGAGG GCGAGGATGG CAGGCCTGCG GACTTTCAGG TGCTGCATAC CTTTGGCTAC GCGCCGCTGC AACAGTACCT CGTTGCCTTG TCGCGCGGCC GCCTGCAGGC GCTGACCATT GCCTGGGACA GCCGGCCAGC GGAGCAGGGT GGGCAACGCT GGTTCTCGCT GTACCCCGGG CAGCGCTTTG CACCGGGCGA TCCGCTGCAC TGGACCGGCC GCTACCAGAA CTGGAACGGC ATGTGCGCCG ATTGCCATTC GACGCGGCTG GTCAAGCATT ACGACGATGC CAAGGACAGT TTTGCCAGTA CCTGGCAGGA GAAGACCGTT GGCTGCCAGG CTTGCCATGG CCCAAGCCAG GCCCATGTCG ACTGGGCCCG CGAGCATCCC GGCGCTTCGC CAGCCCAGGG GCTGAGCGTG GACGTCAAGG CGTTGGGCAG CAGAGGCCAA GTGGAACAAT GCGCCTACTG CCACAGCCGT CGGCAGAGCC TGGGCACTGG CCAGATGCCT GGCCACCCGC ACTTGGACCA GAGTTTGCCG GCCACACTGC GCACCGGCTT GTACCATGAC GACGGGCAGA TCGACGGCGA GGTCTACGAG TACGGGTCCT TCACCCAGAG CAAGATGTTT GCCGCCGGGG TCGGTTGCAC CGATTGCCAT GATCCCCATA CCACCCAGGT GCGTATCGAA GGCAACGGCT TGTGCCTGCA ATGCCACAAC GCTCAACCCA ACACCGCGCG CTTCGCCGGC CTGCAGGCCA AGGACTACGA CAGCCCCGCA CACCATCACC ATGCCGCCGG CTCACCTGGG GCGCAGTGCG TGAACTGTCA CATGCCAAGC AAGGATTACA TGGTGATCGA CCCTCGGCGT GACCACAGCT TGCGCATCCC TCGGCCTGAC CTGGCTGCCC AGGGCATTGG CCCGGATGCT TGTACCACCT GCCATCAGGG CCGCGAGCCG GCGTGGGCTG CCAGTGCGAT CGATAGCTGG TTCACCGCAC CCAAGCGCGC GGCCCATTAC GGGCAAGCGT TCCATGGCGT TCGTCAAGAC CCAGGCACCA GCCTCAGCCG GCTGGGCTAC CTCCTCGCGG ACAAGCACAA CCCTGCGATC GTGCGGGCAA CGGCTGCCCA GCAACTGGCC GATCTTGGGC CTGCGGCCGC CAGCAATCTG CGCTGGGCGT TGCAGGACAG TGACGCGCTG GTACGGGCCT ATGCCGTGGG CAGCTTTACC CGTTTGCCGG CTGAACAGCG TATTGCGCCG TTGCTGCCGC TGTTGCAGGA CCCCGCCCTG GCGGTACGCG ATGAAGCCGT GCGGGCCTTG GCCGATGTAC CCGCCGCACA GCTTCCCGAA GCCAGCCGCG CAGCGTTCAC CACTTCGCTT GCCGACTACG AGCAGCGCTT GCGGGGTAAT GCCGACCTGC CTGGTGGGCG GCTCAACCTG GCGGTGCTGA TGCAGCGCCA GGGCCATGAC GCGCAGGCCA TGGAGCAGTA CCGCCAGGCG TTGCACATGG ACCCGTATTT CACACCGGCC AGGGTCAACC TGGTGACCCT GGCCAGCAGC AGCCAACGTC TGGATGACGC CGAAACACTG CTGCGCGAAG GCGTTGCGCT GGACAAGATG CCGGCAACGG ACCGTGGCAA CCTGGCGTAC ATGCTGGCCC TGTTACTGGT CGAGCGGAGC AAGCCGCAAG AAGCGGTCGA CTGGATGGAG CAGGCAGCTG TGGCGCTGCC GGGCAATTCG CGTATTCGCT ACAACCAGGG CCTGTTGCTG TCCCGCATGA ACCGCCGCGA CGAAGCGCTG CAGGCCTTGC GCAGCGGCCT GCAGCAAGCG CCTGAAGATG CCGACTTGCT GTATACGCTG ATCTACCTGC ATGCCTTGGC CGGTGAGCGT GAACAGGCCT ACCCGTATGT GCGGCGAATG CGCGAGGCCG CGCCCGACGA TCCACGGTTG CAGGCGATCG AACCTTACTG GCGCAACAAC CCGTGA
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Protein sequence | MGWRAQVMQG GWVALCLGVL LLISSGVSLG AAAVGEGQLP ALAKDREGYA DADSCQGCHA QQAGQWQHSD HAWALRDASA ANVLGDFNDV HYDQDGVKAH FYRKGGGYFV NIEGEDGRPA DFQVLHTFGY APLQQYLVAL SRGRLQALTI AWDSRPAEQG GQRWFSLYPG QRFAPGDPLH WTGRYQNWNG MCADCHSTRL VKHYDDAKDS FASTWQEKTV GCQACHGPSQ AHVDWAREHP GASPAQGLSV DVKALGSRGQ VEQCAYCHSR RQSLGTGQMP GHPHLDQSLP ATLRTGLYHD DGQIDGEVYE YGSFTQSKMF AAGVGCTDCH DPHTTQVRIE GNGLCLQCHN AQPNTARFAG LQAKDYDSPA HHHHAAGSPG AQCVNCHMPS KDYMVIDPRR DHSLRIPRPD LAAQGIGPDA CTTCHQGREP AWAASAIDSW FTAPKRAAHY GQAFHGVRQD PGTSLSRLGY LLADKHNPAI VRATAAQQLA DLGPAAASNL RWALQDSDAL VRAYAVGSFT RLPAEQRIAP LLPLLQDPAL AVRDEAVRAL ADVPAAQLPE ASRAAFTTSL ADYEQRLRGN ADLPGGRLNL AVLMQRQGHD AQAMEQYRQA LHMDPYFTPA RVNLVTLASS SQRLDDAETL LREGVALDKM PATDRGNLAY MLALLLVERS KPQEAVDWME QAAVALPGNS RIRYNQGLLL SRMNRRDEAL QALRSGLQQA PEDADLLYTL IYLHALAGER EQAYPYVRRM REAAPDDPRL QAIEPYWRNN P
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