| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_3003 |
|---|
| Symbol | |
|---|
| ID | 5870788 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | + |
|---|
| Start bp | 3348915 |
|---|
| End bp | 3349418 |
|---|
| Gene Length | 504 bp |
|---|
| Protein Length | 167 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 641548119 |
|---|
| Product | CinA domain-containing protein |
|---|
| Protein accession | YP_001669231 |
|---|
| Protein GI | 167034000 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1546] Uncharacterized protein (competence- and mitomycin-induced) |
|---|
| TIGRFAM ID | [TIGR00199] competence/damage-inducible protein CinA C-terminal domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 0.500427 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 38 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAAAACG ACCCTGTACT GGCCGCCCTC GGCTATCTCA AAACCAACAA ACTCGTTCTG
ACCACGGCAG AATCGTGCAC TGCGGGCTGC ATGGTGGCTT TGCTCGCGGC AGTACCGGGT
ACCGGAGAGG TGCTGGAAAG CGGCTATGTC GTCTACTCAC CCAGCGCCAA GAAGCGGCTG
CTGGGGGTCA GCGCCGAAAC CATCGAACGA TACGGCCTGA CCAGCGAAGC AGTGGCCTGG
GAAATGGCTT TGGGGGCCTT GAGAGACAGC GATGCGAATG TTGTGATCGC CACCACCGGA
GTAGCCGGGC CGGCGCCCGA GTCCGGGATA CCACCGGGGA CGATGTGCTT TGCGTGGGCT
TTCGCCGGCG AGCCAATTGC CGTTTTCACG CGCACTCAAC GTTTCTTCGG CGAGCGGTCT
GAGGTCATGC GCCAAGGTGC CCTGTTCGGG TTGACCCGGC TTTCCCACTA TCACCAGCGC
TGGCTACGCG GTGAACGCGC CTGA
|
|---|
| Protein sequence | MENDPVLAAL GYLKTNKLVL TTAESCTAGC MVALLAAVPG TGEVLESGYV VYSPSAKKRL
LGVSAETIER YGLTSEAVAW EMALGALRDS DANVVIATTG VAGPAPESGI PPGTMCFAWA
FAGEPIAVFT RTQRFFGERS EVMRQGALFG LTRLSHYHQR WLRGERA
|
|---|
| |