| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_2999 |
|---|
| Symbol | |
|---|
| ID | 5870784 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | - |
|---|
| Start bp | 3345881 |
|---|
| End bp | 3346936 |
|---|
| Gene Length | 1056 bp |
|---|
| Protein Length | 351 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 641548115 |
|---|
| Product | peptidase M42 family protein |
|---|
| Protein accession | YP_001669227 |
|---|
| Protein GI | 167033996 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1363] Cellulase M and related proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 34 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 39 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGAAGACTG AGGCATTACT GACCGAGCTC CTCAACGCCC GAGGGCCGGG CGGACAAGAA
GATGAAGTAC GGGCCATTAG TCTGCGCGAG CTACGCCTAT TCTGTGATGA CACGCACGTC
GACCCTGCTG GTAATGTGGT GGGGGTGATT CGTGGGGGCC GCACTGGTAG CCCAGAGGCA
GCCATACGCG TTATGGCCCA CCTCGATGAG ATCGCGATGA TCGTCAAGAA TGTGCTGGAG
AACGGCACCC TGGAGGTGCT CGCTCTAGGG GGGTCGCAAC CGATAAGCTT CGGCGTCTGC
CCTGTCGATA TCCTGGGCGA TGAACACATC CTGCCGGGTG TTTTGTCTTA CGGTTCAATG
CACAACAGCG GTCGAACTTC GAATGGAAGA GACGTGCTGG CAGGTAATGT TCAGTGGAAA
GATGTCTACA TCGTCACGCG CAAGAGCAAG TCGGAACTCC AGGCGCATGG CGTTCGGCCT
GGTACTCGAG TCGTGCTCAG TCAGCACTGG CGTAAGCCGT TCAAGGTGCA TGACTGTATT
GCCGCTCACT TCCTCGACGA CCGAGCTCCG CTGAGCGCTG TAATTCTCTG CGCGAAGCGG
TTGAGTGAAC GGCGAGAAAA ACTGAAGCAG GACGTTTGGT TCGTGCTTAC GACGCTGGAG
GAAGAGTCGA ATGCCGGCGC CATGTACGCA GCTTCCCGGC TGCCCGGCGA CACCACAATC
GCCGTCGAGG TAGGCCCTGT ACTTGAGGAG TATGGCACGA AGCTTTCGGC CGGCCCGATC
ATCAATACCG GCGACCAGAA AGGATACTAC AGCCGCACCG TGGTGCAGGG TCTGATCGCC
GCTAGCCTAA AGGCAGGTTA TGAGCCTCAG GCGGCATTGC TGGTTGATTT TGCTTCGGAT
GCGAGCGCGG TGATGAGCGC CGGGATTGAT GCCCGGGCCG GTTGCATTGC GATACCGACC
GAGAATACCC ATGGCTTTGA AATGGTGCAT TTGGATGGGA TCACCGCCTG CGCTGAGACC
TTGTTCGAGT TCCTTACAGG CAGTCAGGAC AAATAG
|
|---|
| Protein sequence | MKTEALLTEL LNARGPGGQE DEVRAISLRE LRLFCDDTHV DPAGNVVGVI RGGRTGSPEA
AIRVMAHLDE IAMIVKNVLE NGTLEVLALG GSQPISFGVC PVDILGDEHI LPGVLSYGSM
HNSGRTSNGR DVLAGNVQWK DVYIVTRKSK SELQAHGVRP GTRVVLSQHW RKPFKVHDCI
AAHFLDDRAP LSAVILCAKR LSERREKLKQ DVWFVLTTLE EESNAGAMYA ASRLPGDTTI
AVEVGPVLEE YGTKLSAGPI INTGDQKGYY SRTVVQGLIA ASLKAGYEPQ AALLVDFASD
ASAVMSAGID ARAGCIAIPT ENTHGFEMVH LDGITACAET LFEFLTGSQD K
|
|---|
| |