| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_2943 |
|---|
| Symbol | |
|---|
| ID | 5870728 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | - |
|---|
| Start bp | 3291207 |
|---|
| End bp | 3293468 |
|---|
| Gene Length | 2262 bp |
|---|
| Protein Length | 753 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 641548059 |
|---|
| Product | DEAD_2 domain-containing protein |
|---|
| Protein accession | YP_001669171 |
|---|
| Protein GI | 167033940 |
|---|
| COG category | [K] Transcription
[L] Replication, recombination and repair |
|---|
| COG ID | [COG1199] Rad3-related DNA helicases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 41 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGAGCTACA GCGTGGCAGT GCGTGCCTTG TGCGAGTTCA GCGCCAAGGT CGGTGACCTG
GACCTGCGTT TCACGCCGTC GCCCACCGCC CAGGAAGGCA TTGAAGGGCA TCAGCGGGTA
GTGGCCCGGC GAGCTGCGGG CTACGAGTCC GAAATCACCC TCGAAGGCCA ATTCGAAACC
CTCAAGGTGC GGGGCCGCGC AGACGGTTAT GACCCTGGCA GCAATCGCCT GGAAGAAATC
AAGACGCACC GAGGCGACCT GGCGCGTCAG CCGGCCAATC ACCGCCAGTT GCACTGGGCA
CAGGCCAAGG TCTATGGCTG GCTGATGTGC CAGGCACGCC AACTGCCGAG CATCGAGGTG
GCGCTGGTGT ACCTGGACGT GGACAGCGAT GGCCAAACGT TGTTCAGCGA GCACTATACG
GCTGCCGAGT TGCGGGAGTT CTTCGAAATC CAATGCCAGC GCTTTCTCGG CTGGGCCCAC
TATCAGCATC GACGCCTAGG TGATCGTGAT CAAGGCCTGC AGGCACTGAG CTTCCCCTAT
CCACAATTCC GCCAGGGCCA ACGGCAGCTG GCTGAAACCT TGTACAAGGC GGTGAGCACC
GGCCGTTGCC TGATGGCCCA GGCCAGCACT GGCATTGGCA AGACCCTAGG CACCTTGTTC
CCGCTACTGA AGGCAATGGT GCCGCAACAG CTGGACAAAC TGTTCTTCCT CACCGCCAAG
ACCCCAGGCC GGGCGTTGGC CCTGGACGCC ATCCGTCAGA TCACCGATGC CACGCCGCAA
CCTGCCTTGC GCACACTGGA GTTGATCGCC CGCGACAAAG CCTGTGAGTA CCCGGACAAG
GCTTGCCATG GCGAATCCTG CCCATTGGCT GCGGGTTTCT ACGACCGTTT GGCGGCAGCA
CGCGAGGCTG CGGCCGCACA GCCGTTGCTC GACCGCGCCA ACCTGCGCGA AGTGGCGTTG
GCACACCAGG TATGCCCGTA CTACCTGGGC CAGGAGATGG CGCGCTGGGC CGACGTGCTG
GTTGCCGACT ACAACTACTA CTTCGACGCG CATGCCTTGC TGTTTGGGCT GACCCAGCTC
AACCAGTGGC GCGTAGCGGT GCTGGTGGAC GAAGCGCACA ACCTGGTCGA GCGTGGGCGC
GGCATGTACA GCGCCAGCCT TGACCAAGGG CAACTGCTGG CCTTGCGCCA GAGCAAACCG
CCCGGGCTGG TCAGTGCGCT GGACCGCCTA AACCGGTACT GGAACGCGCT GTATAAAGAG
CAGCGTGCGC CGTACCACGC CAGCGAGTCG CTGCCCGACG GGCTGTTGCG TGCTTTGCAG
CAGTGCATCG GGCTGATTCA GGAGCAAATG AACCAAGCGC CGGCACACGT GGACCCGCAG
GTATTGCAGT TCTTCTATCA GGCCTTGCAG TTCAGCCGGG TTGCCGAACT GTTCGATGAG
CACTTCCTGT TCGACATCAG CCAGCGCCAG GGCCCGCGCA AACGGCGGCT GGCCACACTG
TGCCTGCGCA ACGTCACCCC GGCGCGCCTG CTGGCCCCAC GTATGCAGGC GGCGCGCAGT
GTGACGCTGT TTTCCGCCAC GTTGAGCCCA CGGCACTTCT ACAGCGACCT GCTAGGGATG
CCCGCTGACA CCGCCTGGCT CGAAGTGTCC GCGCCGTTTC GCGCCGAACA GCTGGAAGTA
CGCATTGCCA GCCAGGTGTC CACCCGCTAC CAGCAGCGCC AAGCCTCCCT GGCACCTATC
GTCGAGCTGA TTGCCCGACA GTATGAGCGC ATGCCGGGCA ACTACCTGGC GTTCTTCAGC
AGTTTCGAGT ACCTGCAACA GGTGGCCCAG CTGTTGGCCG AGCAGCATGG CCAGATTCCA
CTGTGGGCTC AGGAACCGGG CATGGACGAG GCGGCCCGCC AGGCATTCCT CGATCGCTTT
GTCGCCGATG GCCGAGGTGT GGGCTTCGCC GTATTGGGCG GTGCTTTCGG CGAAGGGGTG
GACTTGCCAG GCACGCGGTT GATCGGCGCG TTTGTCGCCA CCTTGGGGTT GCCCCAGGTC
AACCCGGTCA ACGAACAGTT CAAGCAGCGC CTTGGGCGGC AGTTTGGCGC GGGGTTCGAC
TATGCCTATC TCTACCCGGG CGTGCGCAAG GTGATCCAGG CGGCTGGCCG GGTTATCCGT
GGCGACCAGG ACCGCGGGGT GTTGGTGCTT ATTGACGAAC GTTTCGCTGA GCCCAGGGTT
CAGCAGATGT TCCCTGGGTG GTGGCCGGCG GTTATCGTCT AG
|
|---|
| Protein sequence | MSYSVAVRAL CEFSAKVGDL DLRFTPSPTA QEGIEGHQRV VARRAAGYES EITLEGQFET
LKVRGRADGY DPGSNRLEEI KTHRGDLARQ PANHRQLHWA QAKVYGWLMC QARQLPSIEV
ALVYLDVDSD GQTLFSEHYT AAELREFFEI QCQRFLGWAH YQHRRLGDRD QGLQALSFPY
PQFRQGQRQL AETLYKAVST GRCLMAQAST GIGKTLGTLF PLLKAMVPQQ LDKLFFLTAK
TPGRALALDA IRQITDATPQ PALRTLELIA RDKACEYPDK ACHGESCPLA AGFYDRLAAA
REAAAAQPLL DRANLREVAL AHQVCPYYLG QEMARWADVL VADYNYYFDA HALLFGLTQL
NQWRVAVLVD EAHNLVERGR GMYSASLDQG QLLALRQSKP PGLVSALDRL NRYWNALYKE
QRAPYHASES LPDGLLRALQ QCIGLIQEQM NQAPAHVDPQ VLQFFYQALQ FSRVAELFDE
HFLFDISQRQ GPRKRRLATL CLRNVTPARL LAPRMQAARS VTLFSATLSP RHFYSDLLGM
PADTAWLEVS APFRAEQLEV RIASQVSTRY QQRQASLAPI VELIARQYER MPGNYLAFFS
SFEYLQQVAQ LLAEQHGQIP LWAQEPGMDE AARQAFLDRF VADGRGVGFA VLGGAFGEGV
DLPGTRLIGA FVATLGLPQV NPVNEQFKQR LGRQFGAGFD YAYLYPGVRK VIQAAGRVIR
GDQDRGVLVL IDERFAEPRV QQMFPGWWPA VIV
|
|---|
| |