| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_2788 |
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| Symbol | |
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| ID | 5870574 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | + |
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| Start bp | 3132841 |
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| End bp | 3134763 |
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| Gene Length | 1923 bp |
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| Protein Length | 640 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 641547906 |
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| Product | extracellular solute-binding protein |
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| Protein accession | YP_001669018 |
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| Protein GI | 167033787 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG4166] ABC-type oligopeptide transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.0852598 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 0.110267 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCCCTG TGGGGGCGGG TTTACCCGCG AATGCGCCAG ATCAGGCAAC AAGATTGCAT
GGATGGACGC ATTCGCGGGT AAACCCGCTC CTACAGGTTC TGTGTTACCT GTTCCTGCTT
TGTTTCGCAT TCAACACGCA GGCCGCCCCC TCCCACGCCC TCACCGTCTA CGGTGAAGCC
CCCCGCTACA ACGCCAGCTT CCAGCATTTC GACTATGTAA ACCCCAACGC CCCCAAAGGT
GGCATCCTGC GCCGCTCGGC CATCGAGATT GGTCAGTTCG ACCACATCCT CCCCTACATC
GACAAGGGTA TCGGCGTCAG CGAAGTCGAT GGCTTGCTCT ACGCGCCTCT GGCCGTGCGC
TCGTTCGATG AACCCTACAC CGTGTATGGC CTGATTGCCC GACGCATGGA GCGCGGGCCC
GATGACGTCT GGCTGCGTTT CGAAATAGAC CCGCGCGCCA CCTTCGCCGA TGGCAAGCCG
GTGCGTGCCG ACGATGTACG TTTCACCTTC GAACTCTTGA TGAGCAAGGG CAGCCTCAAG
TACCGCACCC AGTTCGCCGA GGTCACCGGC GTTACCGTGG AAAGCCCGCG CAGCGTGCGT
TTCGACTTCA AACCCAAGCA CGGCCGCACC CTGGCGCTGG ACCTCGCCAG CCTGCCGGTG
CTGCCCGAGC ACGACTGGCA ACAGCGCGAC TTCGCCAACG GTGCCGGCTT CGACAAACCG
GTCGGCAGCG GGCCGTACCG CATCGGGCGC ATCGACAATG GCCGCAGCAT CACCTTCGAG
CGCGACCCGA ACTGGTGGGC GCGTGAGCTG CCCGCCAGCC GTGGCCGCTA CAATTTCGAC
AAGTGGCGCA TCGAGTACTT CGGCGACACC GAAGTGGCGC GCCAAGTGCT CAAAGGCGGT
GGCTACGACT ACAACCGCGA GTTCTCCGCC ACCGCCTACA CCTTGGGCTA CAACGGCGTG
CAACTGGACG ACGGCCGTCT GCAACGCGCC CACCTGGGCC CGGCCAAGCC GCAGGTGGCC
CAAGGCTTCG TGTTCAACCT CGACCAGCCG CAGTTCAAGG ACCGCCGTGT GCGTCAGGCG
CTGGGCATGT TGTGGGACTA TGAGTGGAGC AACCGGCAGA TGATGCGCAA TATGTACATC
CGCCAACAGA GTGTGTTCTC CAACACCCCG TTGGCTGCCC GCAAGCTGCC CGATGCCAGC
GAGCTGAAGC TGCTTGAGCC ACTGCGCGGC AAGGTGCCGG ACGAAGTCTT CACCACCGTG
TTCACCGCCC CGGTTACCGA TGGTTCGGGC ATCATCCGCC AGCAGCAGCT GCAGGCCCTT
GCCCTGCTCG AACAAGCCGG CTGGCACCCT GAAGGCGACC GCCTGGTGAA CAGCCAGGGC
ACACCGCTGG CGTTTACCTT CCTCAACGGC CAGTCGGGCA TGAAGCGCCT GCTGTTGCCG
TGGAAGCGCA ACCTGGCCCA GATCGGCGTC ACCCTGAACA TCCGCAACGT CGATTCGGCC
CAGTACGTCA ACCGGCTGAT GGCGCGCGAC TACGACATGA TCGTCACCGG CTACCCGGTC
ACCCTGTCGC CGGGTGCCGA GCTGTACAAC TACTTCGGCT CGACGGCCGC GCACGACCCT
GGCTCGAACA ACCTGATGGT GTTGCAGGAC CCCGCCGTGG ACCGCCTGAT CGACGGCCTG
GTGCGGGCCG AAACTCAGGC CGACATGCTG CATCATGCCC ATGCGCTGGA CCGGGTACTG
CAATGGAACT ACTACTGGAT CCCCAACTAC TACCCACCGG GCAGCTCCAC CGCCTGGTGG
AACCGCTTCG GCCTGCCCAA GGTACAGGCC GCCTATGACG AAGGCCTGGA CACCTGGTGG
GAGGCAAGCC CCACCGCGCT GACCAATGAG CAAATGGCCG AACGCCGGAA GGCCTCGCCA
TGA
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| Protein sequence | MSPVGAGLPA NAPDQATRLH GWTHSRVNPL LQVLCYLFLL CFAFNTQAAP SHALTVYGEA
PRYNASFQHF DYVNPNAPKG GILRRSAIEI GQFDHILPYI DKGIGVSEVD GLLYAPLAVR
SFDEPYTVYG LIARRMERGP DDVWLRFEID PRATFADGKP VRADDVRFTF ELLMSKGSLK
YRTQFAEVTG VTVESPRSVR FDFKPKHGRT LALDLASLPV LPEHDWQQRD FANGAGFDKP
VGSGPYRIGR IDNGRSITFE RDPNWWAREL PASRGRYNFD KWRIEYFGDT EVARQVLKGG
GYDYNREFSA TAYTLGYNGV QLDDGRLQRA HLGPAKPQVA QGFVFNLDQP QFKDRRVRQA
LGMLWDYEWS NRQMMRNMYI RQQSVFSNTP LAARKLPDAS ELKLLEPLRG KVPDEVFTTV
FTAPVTDGSG IIRQQQLQAL ALLEQAGWHP EGDRLVNSQG TPLAFTFLNG QSGMKRLLLP
WKRNLAQIGV TLNIRNVDSA QYVNRLMARD YDMIVTGYPV TLSPGAELYN YFGSTAAHDP
GSNNLMVLQD PAVDRLIDGL VRAETQADML HHAHALDRVL QWNYYWIPNY YPPGSSTAWW
NRFGLPKVQA AYDEGLDTWW EASPTALTNE QMAERRKASP
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