Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputGB1_2770 |
Symbol | |
ID | 5870556 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida GB-1 |
Kingdom | Bacteria |
Replicon accession | NC_010322 |
Strand | + |
Start bp | 3108562 |
End bp | 3109284 |
Gene Length | 723 bp |
Protein Length | 240 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 641547888 |
Product | hypothetical protein |
Protein accession | YP_001669000 |
Protein GI | 167033769 |
COG category | [S] Function unknown |
COG ID | [COG3521] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | [TIGR03352] type VI secretion lipoprotein, VC_A0113 family |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 0.0124762 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 33 |
Fosmid unclonability p-value | 0.552799 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCAACACA AGCACATCGC CTTCAAGCGC CTGACCACCG CCGCCCTGCT GCTGGCGCTG GCGGGCTGCG GGGTCACCGA CCGTATCGGC AAACGCATGG AGGACAGCTG GGCGGCCGAC ATGCTGGCTG ACAGCGAGAA GGTCATCCTG ACCTCCGACG GCGGCAACCA GCTCAACCCC GATACCGAGG GCAAGCCGCT GTCGGTGGTG ATGCGCGTGT ACCAGCTGAC CGACCTTGAG CGCTTCGCCG CAACCGATGC CGAAACCCTG TGGGATACCC CGGAAAAGGC ACTGGGCAAT ACCCTGGTGG AAGCCCGCGA GATCACCCTG CTACCGGGCA TTGGCCAGAT CGACCAGTGG CCTCTGGCCA ATAGCGCTCG CTACGTCGGC GTGGCGGCGT TCTTCCGTGA TGAACAAGGC GCACGCTGGA AAGTCGCCTT CGACGCAAAC TCGCTGCGCA AGGACGGCAT CTGGTTCTCA TCCGACGGGC TGCGGGTACT GGTGGATAAA ACCGAAATCA GTGCCATGCG GGGCGTGGAT GTGCTGAACA AACCCCCGAC TGCCGACCAG CTCGCGGCGG CGCAGAAGGC CAAGGATGCC GCCCCGACGC TCACCGACAA GGTGCAGGAC GCGGTCATCC AAAAAGCCAG CGACGCCGCC AGCCAGTCGG CCAGCAACGC CATGGATTCA ACCTTCAACT CTTTAGTGGA TAGCGTCAAA TGA
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Protein sequence | MQHKHIAFKR LTTAALLLAL AGCGVTDRIG KRMEDSWAAD MLADSEKVIL TSDGGNQLNP DTEGKPLSVV MRVYQLTDLE RFAATDAETL WDTPEKALGN TLVEAREITL LPGIGQIDQW PLANSARYVG VAAFFRDEQG ARWKVAFDAN SLRKDGIWFS SDGLRVLVDK TEISAMRGVD VLNKPPTADQ LAAAQKAKDA APTLTDKVQD AVIQKASDAA SQSASNAMDS TFNSLVDSVK
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