| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_2603 |
|---|
| Symbol | |
|---|
| ID | 5870392 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | + |
|---|
| Start bp | 2923380 |
|---|
| End bp | 2924168 |
|---|
| Gene Length | 789 bp |
|---|
| Protein Length | 262 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 641547726 |
|---|
| Product | extracellular solute-binding protein |
|---|
| Protein accession | YP_001668838 |
|---|
| Protein GI | 167033607 |
|---|
| COG category | [E] Amino acid transport and metabolism
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 0.426319 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 0.00328337 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCGGGTAA GAAAAACCAG GATGCTACTT GCATCCAGCG CAGTGGCAGT AATTGCATTG
TTCTCTCAGG GCGTGGCGCA GGCCGATGAC CTGCAGGCAG TTCAAGAATC AAAAATACTG
CGCGTGGCCA TGAGCGGCCA GTACGCTCCC TTCAGTTTCG CCAACGAAAA GAATGAAATT
GTGGGTTTCG ACGCCTCCAT TGGTGAAGCA CTCGCCCAGC GCTTGGGTGT AAAGATAAAA
ATCATCACCA CCCCCTTCGA CGGCATTATT GCCGGGCTGT TAGCCAAAAA GTATGACGCC
GTCATCGCTT CGATGACCAT TACTCCCGAG CGGCTGAAAG CCGTTGATTT CGTGGGGCCT
TATTACCATG CGGGCCGTAC CATCGGTGTA AAGGAAGGCT CTCCGATCAA GGGGCTGGAT
GACCTCAAGG ACGTCACCGT TGGCGTTACC TTGGGCGACT CGCATGACAA ATGGGCGCGT
GCTCGCGGCA ATCTTAAAGT GCGCACCTAT AAAGGGTTGC CGGAAATGCT GGTCGACCTG
GATGCCGGGC GTATCGATGC GGTAGTGATG GACAGCATTC CGGTCATGGT TGCGGTAAAG
GAAACCGGTC AGAAAGTGCG CATCATCAAC CTGCCCGACG AGCAGGGTGG CCGTGAAGGC
CTCGGCATTG CCATCCGCAG GAACAACCCT GAACTCAAGG CCCAGTTGCA GAAGGCCCTG
GACGAGATCC TGGCCGATGG CACTTATAAA GAAATCTCCA TGAGATGGGT GGGTAGCGAC
ATCCGCTGA
|
|---|
| Protein sequence | MRVRKTRMLL ASSAVAVIAL FSQGVAQADD LQAVQESKIL RVAMSGQYAP FSFANEKNEI
VGFDASIGEA LAQRLGVKIK IITTPFDGII AGLLAKKYDA VIASMTITPE RLKAVDFVGP
YYHAGRTIGV KEGSPIKGLD DLKDVTVGVT LGDSHDKWAR ARGNLKVRTY KGLPEMLVDL
DAGRIDAVVM DSIPVMVAVK ETGQKVRIIN LPDEQGGREG LGIAIRRNNP ELKAQLQKAL
DEILADGTYK EISMRWVGSD IR
|
|---|
| |