| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_2591 |
|---|
| Symbol | |
|---|
| ID | 5870380 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | + |
|---|
| Start bp | 2911157 |
|---|
| End bp | 2912521 |
|---|
| Gene Length | 1365 bp |
|---|
| Protein Length | 454 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 641547714 |
|---|
| Product | amino acid permease-associated region |
|---|
| Protein accession | YP_001668826 |
|---|
| Protein GI | 167033595 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0531] Amino acid transporters |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 33 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 0.196035 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGTCCT GTAGTGCACC CCTCTCGAAA CTGAAACCGA CGCTGAGCGT CGCTGATGTC
GTCGCCATCA CCGTATCTTC GGTCACCCCC GCCAGCTCGG TCTTCGTCAT CGCGCCATTT
GCCATCGCCC AGGCAGGTAC CGGGGTGATC TGGGCCTTCA TGCTCGGTGG CGTGCTGGCG
CTGATGTTTG CACTTTGCTA TGCCGAACTG GGGCGCGCCC ACAGTGCTGC CGGGGGAGAG
TACGTGTTTG CCAAACGGGT ATTTGGCGGC ATGGCCGGTT ACGCCACCTT TCTTACCGTG
CTGGCGATGC TGGTGTTCAT TCCACCGGTA CTGGCAACCG GAGCTGCCAC GTACTTGAAT
GCGGCGCTGG GCTCCCAGCT TGATGGGCAG GCGGTGGCCC TGGTGATTGT CGCCCTGGGG
TATCTGCTGG GTATCCTCAA TATAAAGTTG AACGCATGGG TTACCGGCAT CTGCCTGTTG
CTTGAGGTAG CGGCGCTGAT GGTGATCGTG GTGCTGGGCT TCGGCCATGC CCAGCAACCG
CTCACCAGCT TGGTCAGCCC ACTGGTGCTC GATAACGGGA TACTGCATGC GGCGCCCTGG
GCGCTGGTGA TTGGTGCGGT CGGCACGGCG TTGTTTTCCT TCAATGGTTT TGGCGGCGCA
GTGTTGCTGG CAGAAGACAT GAAGTGCGGC GGGCGTGGCA TCCCCAAGGC GGTGCTGTGG
TCACTGGTGC TGGTGGTGGC CATCGAAGTG ATCCCGCTGC TGGCACTGCT GATCGGCGCG
CCCTCGCTGG AGGCGATGCT GGGCAGCCCG GACCCGATTG GCTACCTGCT GACGGCGCAT
GGCAACGAAA CGCTGTCGCG CCTGGTGAGT GGCGGGATTT TCCTGTCGGT GTTCAACGCC
ATCATCGCCC TGGTGATCCA GAGTGGGCGG GTGATCTACA GCAGCGGGCG GGATGCGTTG
TGGATGCCGG CCCTGAACCG TACATTCACC CGCATTCATC CCAAGTGGGA GTCGCCGTGG
TTGGCCACGC TGTTCCTTGC CGTGCCTTCC ACGGCCCTGA CCTTCAGCTC CAACCTGGCA
GAACTCACGT CTTTCACCGT ACTGCTGATC CTCTGTGTGT ACCTGGTCGT GGGGTTGTGC
GCACTGTTCA GCCGGGTACT GCGCCGTGAT CGCGAGCACC CGTACCGCAT GCCGCTGTGG
CCGTTGCCGG CACTGGCTGC CGTGACCGGT GCCGGTTACC TGCTGACGAC CCTGCTGAGT
GCGGCTTCGG CCCGGGACAT CTTCATCATT GTCGGGCTTC TGCTTACCTC CATGTTGCTG
TATGGCACAT ATGGCAGGTT GAGCCCGGCG TTTCAGAAAC TTTGA
|
|---|
| Protein sequence | MTSCSAPLSK LKPTLSVADV VAITVSSVTP ASSVFVIAPF AIAQAGTGVI WAFMLGGVLA
LMFALCYAEL GRAHSAAGGE YVFAKRVFGG MAGYATFLTV LAMLVFIPPV LATGAATYLN
AALGSQLDGQ AVALVIVALG YLLGILNIKL NAWVTGICLL LEVAALMVIV VLGFGHAQQP
LTSLVSPLVL DNGILHAAPW ALVIGAVGTA LFSFNGFGGA VLLAEDMKCG GRGIPKAVLW
SLVLVVAIEV IPLLALLIGA PSLEAMLGSP DPIGYLLTAH GNETLSRLVS GGIFLSVFNA
IIALVIQSGR VIYSSGRDAL WMPALNRTFT RIHPKWESPW LATLFLAVPS TALTFSSNLA
ELTSFTVLLI LCVYLVVGLC ALFSRVLRRD REHPYRMPLW PLPALAAVTG AGYLLTTLLS
AASARDIFII VGLLLTSMLL YGTYGRLSPA FQKL
|
|---|
| |