| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_2485 |
|---|
| Symbol | |
|---|
| ID | 5870274 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | - |
|---|
| Start bp | 2782118 |
|---|
| End bp | 2783209 |
|---|
| Gene Length | 1092 bp |
|---|
| Protein Length | 363 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 641547608 |
|---|
| Product | diguanylate cyclase |
|---|
| Protein accession | YP_001668720 |
|---|
| Protein GI | 167033489 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 0.120562 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 43 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTCAAGA CCATCGAAGA ACACGTGCGC AAGCAGGTCG CCCCCGCCGC CTTGCGCGCC
GAGTTCCGAC AACACGAATT CGAGTCCATG CGCCCGTTCT GCCTGCTGGT GTTCTGCATC
AGCATCCTGA TCTGGCTGGT CTTCGACCTG ATCGTCAGTT TTCTCGGCGG TCAGGGTTTC
ACCTGGCTGT CCTACCTGTT CATCGCCGCG CTCGGCAGCC TTTGCGTAGT ACTGCATTTC
ACCCGCCGCA GCCATCACTT CGATGTACTC AACCTGCTGT TCATCACCAT CATCACCTTG
GGCATGCGCC TGCTGATCGA AGGCATCCCG GTGGCCCTGC GCCCGGTGTG GCTGGTACTT
GGCGTATCCA CCGTGCTGTA CGCCGTGTCG GTGCTGCCGG TGCGACGCTG GTCGTTCTTC
AGCGCCATGG TCATCACCTG GGTGATGCTC AACCCGTTCT ACCACACCCG TATCGAGCCC
GACGCGCTCG AAGGCGCCAT GCTGGTTAGT TACGCCGTGT TTCTCAGCGG CCTGATCACC
TACAGCTACC TGCAGACGCG CAAGGCCAAA CTGCACAATT TCTACCTGTC CAGGGTGCTG
CTTGAACAAG CTTACGTCGA CGCCCTGACC GAAATCCCCA ACCGCCGCTC GTTCATGGCC
AAAACGGAGC AACAACTGAA ACTGGCAACG CCCGGGCAAT ACCTGGCGAT GGTCGACATA
GACAACTTCA AGAAAGTGAA TGACCGTTTC GGCCACGACA TTGGTGATGA AGTGCTAAGA
CGCGTGGCAC TGCATATCAA GGCCGCCATG GTCGATTCCG AGTTCGCCCG ACTGGGCGGC
GAGGAGTTTG CCATTTTTCT TGAAGGGCTG GACCAGCAAG GTGCCGAGCA GCAGATGGAG
GCATTGGTAC GCAGGGTACG CGAGGATGCG GGCACACACC CGGTGACCAT CAGTATCGGG
CTGGCCCAGG TGAGCGCGGG CGATACATTG ACCATGGCGT TGATCAAGGC CGACCAGGCG
CTGTATGAAG CCAAGCACAC CGGCAAGGAC CGGTTCGTGC TGTGGACTAC CCGGCTGGCA
AGCGAATCCT GA
|
|---|
| Protein sequence | MFKTIEEHVR KQVAPAALRA EFRQHEFESM RPFCLLVFCI SILIWLVFDL IVSFLGGQGF
TWLSYLFIAA LGSLCVVLHF TRRSHHFDVL NLLFITIITL GMRLLIEGIP VALRPVWLVL
GVSTVLYAVS VLPVRRWSFF SAMVITWVML NPFYHTRIEP DALEGAMLVS YAVFLSGLIT
YSYLQTRKAK LHNFYLSRVL LEQAYVDALT EIPNRRSFMA KTEQQLKLAT PGQYLAMVDI
DNFKKVNDRF GHDIGDEVLR RVALHIKAAM VDSEFARLGG EEFAIFLEGL DQQGAEQQME
ALVRRVREDA GTHPVTISIG LAQVSAGDTL TMALIKADQA LYEAKHTGKD RFVLWTTRLA
SES
|
|---|
| |