| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_2150 |
|---|
| Symbol | |
|---|
| ID | 5869939 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | + |
|---|
| Start bp | 2396999 |
|---|
| End bp | 2398018 |
|---|
| Gene Length | 1020 bp |
|---|
| Protein Length | 339 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 641547275 |
|---|
| Product | AraC family transcriptional regulator |
|---|
| Protein accession | YP_001668387 |
|---|
| Protein GI | 167033156 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 0.511846 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 0.0224747 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGCGATA GCGATTCGGT CGCCGTGTAC TTCCTCAACG CCATGCTCCA TGCCCTGCGC
GACAGCCCCG CCGAGCGCGA CGCTCAGCTG CTGGCGGTGG GCATCGCCCC GCAATTGCTC
GACCAGCCCC AGGCACGGGT GCCGGCCAAG GCGTTCGCCC AGCTATGGCT GGCGTTGATC
CAGCGCCTGG ACGATGAGTT TTTCCGCCTC GACAGCCATG GCATGCCGCT GGGCAGTTTT
GCCCTGATCT GCCGGGGCTT GATCCTCGAA CCGAACCTGG AAAAGGCCTT GCGCCAGTGC
ATGGGCGGTT TCGGCCTGTT CCTGCGTGAT TTGCAGGGCA GCCTGACCGT ACGTGGCGGG
CGGGCGCTGA TCAGTGTGCA GTCGAACATT GCCGACCCGC TGACTCGGGT GTATGCCGAG
GAAACCTACC TGGTGCTGAT GATCGGCATG CTGTGCTGGC TGGCCGGGCG GCGGATCGCC
ATCGATCGCA CCGAGCTGGC CGAGTTACGT CCGGCCCAGG AGGACGACCT GCTGCTGTGG
GGGCCAGACC TGCGCCTGGG CAGCGGGCGC ACCGAGGTGG AGTTCGACAG CGCCTATCTG
CGCCTGCCAG TGGTGCAGGA CCTGGCGGCC TTGAAGACCT TTCTGCGCAG TGCGCCGCAG
GGGCTGGTGA TTCGTTTTCG CAACCAGAAC GGCCTGGTGG CCGAGGTGTA TCGGCACCTG
CGGGCCCTGC GCTATGGGCA GTGGCCGACG TTGACGGCCC TGGCGCAACA GCAGGGGATC
AGTGCCAGTA CGTTCCGCCG GCAGTTGGAG CGTGAGGGGC GGTCCTATCA GCAGATCAAG
GATGAGGTGC GCCGGGCGAT GGCCTTCGAG CGGTTGCGCG AAGGCGAGCT GAGCATTGCC
GAAATTGCCG AGCAAGCGGG GTTTCAAGAG CCCAGCGCGT TTCACCGGGC ATTCAAGAAG
TGGACCGGCC ACAGCCCCGG CAGCTATCGG GCGCGGTTGG CCGGTACAGG CAATCAATGA
|
|---|
| Protein sequence | MRDSDSVAVY FLNAMLHALR DSPAERDAQL LAVGIAPQLL DQPQARVPAK AFAQLWLALI
QRLDDEFFRL DSHGMPLGSF ALICRGLILE PNLEKALRQC MGGFGLFLRD LQGSLTVRGG
RALISVQSNI ADPLTRVYAE ETYLVLMIGM LCWLAGRRIA IDRTELAELR PAQEDDLLLW
GPDLRLGSGR TEVEFDSAYL RLPVVQDLAA LKTFLRSAPQ GLVIRFRNQN GLVAEVYRHL
RALRYGQWPT LTALAQQQGI SASTFRRQLE REGRSYQQIK DEVRRAMAFE RLREGELSIA
EIAEQAGFQE PSAFHRAFKK WTGHSPGSYR ARLAGTGNQ
|
|---|
| |