| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_2043 |
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| Symbol | |
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| ID | 5869832 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | + |
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| Start bp | 2292100 |
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| End bp | 2293314 |
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| Gene Length | 1215 bp |
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| Protein Length | 404 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 641547168 |
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| Product | RND family efflux transporter MFP subunit |
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| Protein accession | YP_001668280 |
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| Protein GI | 167033049 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR00999] Membrane Fusion Protein cluster 2 (function with RND porters)
[TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 0.148074 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 35 |
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| Fosmid unclonability p-value | 0.931139 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTAACC CACGCAAGCT AGCCCTTCTG GCCGCCGCCG TCGCCGCACT CGGCCTTGGC
GGCCTGGCCT GGACCGGCAA CCTCGGCCAG GCGTCGAAAG CCGAAGCCCG GCACGACGAT
CATGGCCAAG ACAGCCACGG CCACGCCGCA GAGCAGGCCA CTGAGGGCCA TGCCGAGGAG
GGGCACGCTG AAGAAGAAGG CCAGCTGCAC CTGTCCATCG CCCAGATCGA AGCCGCCGGC
GTGCAACTGG CTGCCGCAGG CCCCCGTGAG TTGGGCATCG CCATCAGCTT CCCAGGTGAA
ATCCGCTTTG ACGAGGACCG TACCGCCCAC GTCGTCCCCC GTGTGCCGGG CGTCGTCGAG
GCGGTGCACG CCGAGCTGGG CCAGGCGGTC AAGCGCGGCC AGGTGTTGGC GGTGATCGCC
AGCCAGCAGA TCTCCGACCT GCGCAGCGAG CAGCAGGCCG CCCAGCGTCG TCTGGAGCTG
GCGCGGCTGA CCTTCCAGCG TGAACAGCAA CTGTGGCAGG AGCGCATCAG CGCCGAGCAG
GATTACCTGC AGGCGCGCCA GGCATTGCAG GAGGCCGAGA TCGCCTTGGC CAACGCCCGG
CAGAAGGTCG CCGCCGTGGG CCCGGCCGGT GCCGGTAACC GCTATGAGCT ACGTGCGCCA
TTCGATGCGG TGGTCGTGGA AAAGCACCTG ACTGCAGGCG AAGTGGTTGA CGAGACCAGC
AACGCTTTCA CCCTGTCTGA CTTGAGCCGT GTGTGGGCCA CCTTCGCCGT GGCCCCGCGT
GACCTTGGCA AGGTCGTGAC TGGCCGCGAT GTCACGGTCA GTGCGCCGGA CCTGGGCGCC
CAGGTCGAGG GCAAGGTCAA CTACGTCGGC AGCCTGCTCG GTGAGCAGAA CCGCGCCGCT
ACCGTGCGCG CCACCCTGGC CAACCCCAAC GGGGCCTGGC GCCCAGGGCT GTTCGTCAAC
ATTGCTGTCA GCGTCGAGCG CTTCAAGGCC GCCGTGACGG TGCCGGAAAA CGCCCTGCAA
ACCTGGGAAG AACAGACCGT GGTGTTTGCC CGCACCGAGG AAGGCTTCGA GGCCCGCCCG
GTAACGACTG GCCGCCGCGA TGCTGGCCAG GTAGAGATTC TCAGCGGCCT GGCCGCCGGT
ACTCAGGTAG CGGCCGCCGG CAGCTTTGTC CTCAAGTCGG AGCTGGGCAA AGGCTCGGCC
GAGCACAGCC ATTGA
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| Protein sequence | MTNPRKLALL AAAVAALGLG GLAWTGNLGQ ASKAEARHDD HGQDSHGHAA EQATEGHAEE
GHAEEEGQLH LSIAQIEAAG VQLAAAGPRE LGIAISFPGE IRFDEDRTAH VVPRVPGVVE
AVHAELGQAV KRGQVLAVIA SQQISDLRSE QQAAQRRLEL ARLTFQREQQ LWQERISAEQ
DYLQARQALQ EAEIALANAR QKVAAVGPAG AGNRYELRAP FDAVVVEKHL TAGEVVDETS
NAFTLSDLSR VWATFAVAPR DLGKVVTGRD VTVSAPDLGA QVEGKVNYVG SLLGEQNRAA
TVRATLANPN GAWRPGLFVN IAVSVERFKA AVTVPENALQ TWEEQTVVFA RTEEGFEARP
VTTGRRDAGQ VEILSGLAAG TQVAAAGSFV LKSELGKGSA EHSH
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