Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputGB1_2040 |
Symbol | |
ID | 5869829 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida GB-1 |
Kingdom | Bacteria |
Replicon accession | NC_010322 |
Strand | - |
Start bp | 2289353 |
End bp | 2290201 |
Gene Length | 849 bp |
Protein Length | 282 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 641547165 |
Product | shikimate 5-dehydrogenase |
Protein accession | YP_001668277 |
Protein GI | 167033046 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0169] Shikimate 5-dehydrogenase |
TIGRFAM ID | [TIGR00507] shikimate 5-dehydrogenase |
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Plasmid Coverage information |
Num covering plasmid clones | 34 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 35 |
Fosmid unclonability p-value | 0.842464 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCCAAC AAGCCATCCT CGCCGGCCTG ATCGGCCGCG GCATCCAGCT GTCGCGCACC CCCGCCCTGC ACGAACACGA AGGCGACGCG CAGGCCTTGC GTTACCTGTA CCGCCTGATC GATGCCGACC AGTTGCAACT GGACGACAGC GCCCTGCCCG GCCTGCTTGA CGCCGCGCAG CACACCGGTT TTACCGGGCT CAACATCACC TACCCGTTCA AGCAGGCGAT TCTGCCGTTG CTCGACGAGC TGTCCGACGA AGCCCGTGGC ATCGGTGCGG TGAACACCGT GGTGCTCAAG GACGGCAAGC GGGTCGGCCA CAACACCGAT TGCCTGGGTT TTGCCGAGGG CTTGCGCCGT GGCCTGCCCG ACGTCGCGCG GCGCCAGGTG GTGCAGATGG GCGCTGGCGG TGCAGGCTCG GCCGTGGCCC ATGCCCTGCT GGGTGAAGGG GTCGAGCGGC TGGTGCTGTT CGAAGTGGAC GCTGCCCGTG CACAGGCATT GGTAGACAAC CTGAACGCTC ATTTCGGCGC CGGTCGTGCC GTGGTCGGCA CGGACCTGGC CACGGCATTG GCCGAAGCGG ACGGGCTGGT CAACACCACC CCGGTGGGCA TGGCCAAGCT ACCAGGCACC CCACTGCCGG TAGCGTTGCT GCATGCACGC CTGTGGGTGG CGGAAATCAT CTACTTCCCC CTGGAGACCG AACTGCTGCG CGCGGCCCGG GCACTGGGTT GCCGCACCCT GGATGGCAGC AACATGGCCG TGTTCCAGGC GGTGAAGGCG TTCGAGCTGT TCAGCGGGCA ACAGGCGGAT GCGGCACGGA TGCAGGCGCA TTTCGCCAGC TTCACCTGA
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Protein sequence | MSQQAILAGL IGRGIQLSRT PALHEHEGDA QALRYLYRLI DADQLQLDDS ALPGLLDAAQ HTGFTGLNIT YPFKQAILPL LDELSDEARG IGAVNTVVLK DGKRVGHNTD CLGFAEGLRR GLPDVARRQV VQMGAGGAGS AVAHALLGEG VERLVLFEVD AARAQALVDN LNAHFGAGRA VVGTDLATAL AEADGLVNTT PVGMAKLPGT PLPVALLHAR LWVAEIIYFP LETELLRAAR ALGCRTLDGS NMAVFQAVKA FELFSGQQAD AARMQAHFAS FT
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