| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_2000 |
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| Symbol | |
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| ID | 5869790 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | + |
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| Start bp | 2249138 |
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| End bp | 2253634 |
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| Gene Length | 4497 bp |
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| Protein Length | 1498 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 641547127 |
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| Product | hypothetical protein |
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| Protein accession | YP_001668239 |
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| Protein GI | 167033008 |
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| COG category | [S] Function unknown |
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| COG ID | [COG4886] Leucine-rich repeat (LRR) protein |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.220438 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 44 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGACACTA CTCCGCTATC AAGCGCACAG GCAGCCATCG ATGCTTTCCA GGACGGCATC
ATCGGCAAGC GCCTGCCACT CTGGTTGCGT CAGGCACCCG CCGAGCAACT GCCAGAGATC
AGCATGGCAT TGGCAAATAG CCTGCGCTGT CGTGAGCAAG TGAATGCGCT GCTGCGGGGC
ATCGAAAGCA TCGACAGTTT CGTTGCAGCG GGCCTGGAAA AGGCCCTTGG CGAGCGTTAC
GGGATTGTTC GTAACGCGCG CGCGCTCAGG TTTCTGGAGG GCCGTCGGGA ACCTGTGATC
AACAGTCAGC CGGTTGGCGC GCACCTTACC GAAGTGGTCT ACGAAGAAAA GCCGCTGCTC
GAGGTGGTCC TGCGCAACTT CACTGCCGAG CAGGCCCAGG CGGGTGGCCA GCCGCGTGGT
AATCGCCTAC TGGTTTCGCG TCAGGGCAGG GGCGCACCGC CCACCAGCAT CGAACTTGCC
ACGCTGTGCC GTGAGCTGGA TTTGGGGGCG TGTTATCAAC GTCACCTGGA TTCCATTCTG
AAGCCCGCGG GTGATGCCAG GCGCGTGGAG TCTCAGCTTG GGGATACCAG CCGCTACGCC
ATGCTGGTGG ACGCCTATAA AGCCAGGCAG GAGGGAAAGC TGGATGACAG CGAGCTCAAA
CTGATGGTGA CTGTGTGCGC GGATGGCAAG CTGCTGCGTC TGGCGGGGGA CCGTGTTGAA
GCCAGGCAAC TGAAGCTGCT GGGTTGCCTT ATCGAGCAGG TGATCGTGTT CGAGGTAATT
GACCAGGGCG TTCTTTTCAA TACCACGCGC CGGGTATTGC TCTATGTGCC TGGGGATCCG
GTGTCACCTT GGAGCGTATT TGACAGCATC GACAAATTGA ACCGGGAACT GGGTCGCCGC
TTTCGAGACA AGGCCTATCA GCGTTTCTTC AGCCGCTTCG TGCTGCGCCG TGACAGCCAG
GCGTTTTTCG CTCAGGTCAT GGCGCTGTTC GATGATCTGG CGGTTTGGGC ATTCCGTGAT
CTCGAGCCGC GTTTGCACCC TTACCCGCAA CCGTTGTTCA ACAGCCTGGC ACAGGCACGT
ATGCGCCAGA TCAAGGAAGA TGCAGCGATG ATCGCGGTAC CTGTGGCACG GCTTGATCGT
GAGGTTCAGC GCCAGCATGA CGAGCGCCTG GAGGCCGAGG GGTGGGCAGT GCTCAACCTG
GCCAGCTTCT TTGTGCCGGG CCTTGGCGTG GCGCTGCTTG CCGTGACGGC TTGGGAGCTG
CTGGGCGAGG TCTACCATGG CTTCGAGGCA TGGCAGGAAG GGGATCGCCA AGCGGCACTC
GATCATTTGA CCCATGTCGC CACTGACCTT GCCGTGCTTG CGACCACGGT TGCGGGGGTT
GCCGTGGCAC GACGGATTTG GGCGCGCTCC GCGTGCGTTG ATGCCATGTT GCCGGCTCGG
CTGGAGGACG GCACTGTCAA ACTCTGGCAA CTCGATTTGA CGCCGTTTCA AAGCCAGGCC
CCCGTTGCGG CCACCGGCCA GGACGCATTG GGCATTCGGC GCCTGGATGG GCAGGCCTGG
ATCGAAATGG ACGGGTATGA CTACCGCGTG ATGGCGCCGG CTGGCGACGG TCAGTGGCAA
CTGTGCCCCG TCGACGGCCA CGGGCCGATG CTACGTCACA ATGGTGCTGG CGCTTGGCGA
TTGTGGAGCG AGCAACCGAG TCAGTGGGCC GATAGATACC GCATGTTCCG GCGCTTTGGC
GGGGCATTCA GCAGGCTGGG TGACGAAGAG ATCGACCAGG TCCTGCTGCT TCATGACCTT
GATGGTGACG ATGTGCGTAG CTTGCATGTA CATGCCCAGG CGCCAAGCCC AGGCATGCTT
GACAGTGTGC TGCGGGTCAA GCTCGATCAG CGCATTCGCA GCATGATTGG TTGTCTGCGC
AGTGGCATGC CGGTAGAGGA TGTAACCGTG CTTGAACATG CGCGGCGGTT GCCAGGTGCG
GATGGCCTGC CAGATCAGGC ACTGGCTGAG TTGGCATGGA CGCAGCGCCG AACACTATTG
CATCACCTGT ACGAAGCGCT GCAGCCTACC GACAGCCCTG GCAGCGCAGC CCTACGCCGG
GTTTTTCCAG GGTTGCACGT GCGCGCTGCA CAAGCGTTGG TAAAAGCCGC CAATGGTGTC
GAGCGCAAGC GTCTGCTCTC TAGCGGCAGG GTTGCGCTGG GGCTGGCCGA AGCGGCCAGG
GGCAGCCTGT CGGCTATGCG TCAGGTCCGG GTACTTGAAG CGCTGTACCT GGATACGCCA
CAGAATGCAG ACCTGGCTCG GGTGGCCCTG GGCCTCTTGC GGTACCTGCC TGGAAGCGAA
CAAGGTGTGC GCTGGCGCTT GTACGAAGGT TACCTGGATG GGCCGATGCT GGCGCAAACC
GAACAGGGGC AGCGAGCGTT CGATCTGGTG CACTTGAATG GCCGTTTCCA GTTGCTTGAT
GACCAAGGCA AGGCGCTCGG GGCGCCGGGA GAGTTGTTCG ACGTCATGGC GCTAGCCTAT
ACCGATGAGC AACGTGAGGC GATGAGGGTC GGCGAGCCGT TCTCGCACAA CCTCAGGGTG
CTGCTGGGGC GCGAAGCAGT CAGCCGCCGT GATGAGATCG CTCGTCTGCT CGGCGCGGTA
CGCCCGGGCG CTGTTCGAAT GCCCCTGCGC TTGGCAGATG GGCGTTTGGG CTACCCGCTG
GGTGGCGCTG GCGTGAGTGG TTTCGCATCG AGAGGCAGAG CCCTGAGAGC AACGCTGCGG
GATCTCTTTC CTTGGTTGAG TGATGTGCAG ATCGAGACCC TCGTCGATGA GGCCAGGCGT
TCAGGGCATC AACTTGAACG GGTACTGAGC GACCTGAGCA ATGAGCTCAC GGTACTGCGC
AACACGCTGG ATACCTGGGT GGCACAGGGA CAGGGCGAAG CCAGGGAGGA TCGAGATGCC
TTGCGCCAGA CCTTGTTCAA TTGCTGGAGA CGGTCGGTCG GTGTTGGGGC GTTGCAAATC
GATGCGCAAC AAAACCTGCA TGCCATCTTC TGCAATTTCA GATTGGACGG CTTGCCCAGC
ATGCCTGCGC AAGTCAGCTT CAGAGGCGTT ACCAGCCTAT CGATGTTGCA CCTGAATCTC
CTGGAAGTAC CCAACAGTTT CCTGCTGGCT TTCCCCAACC TGCAAACCCT TGACCTGGGC
GGCAACCTGT TGACGCGCCT ACCACAACCG CTGCTGCAAA TACCGCAACT ACGGCATCTG
AGTCTGACCC ATAACCGGAT TCGTCTGAAC ATGGAGCAAA CCGCCACGTT GGCCAGTTGT
ACGAGCCTGG AGTCTCTCGA CCTGTCCCAC AATCCACTGG GGCGCCCGTT TCCGCTGGCC
GGTTTGACCG AACTGCGATG GCTGAACTTG CGCGACACAC ACATCACGCA ATTCCCCGCA
GGCGTGTTCG AGCGTGCTCA GCTGGTATCC GTTGACTTGC GGGAGAACCG CATCAGGCAT
ATTCCGGAGC AGTTTTTCCA GATGCCCGTA TGGCGTCGGC GGCGGATCCG CCTGAGCGCG
AACCCGTTGG GCGAGGCCCA GATGGGGCGT TTGCGAGCCT CGCTGAGGAG CGACGTTCCT
GTGGTCGACG AGGAGCAAGT GTTTCTGCGC CTGCAGCACG CGCGTGAAGT CTGGGGCGAT
GCGGTGGCCC CGGAGCATCG CGGCTTGATG CTTGCGGCCT GGGACTCGCT GGATGAACGG
CAAGATGCCG GGCGCTTTTT CCGTGTCCTT GGGCAGCTTT TGCTGTCCGA GGACTTTCGT
GTCAACGCGC GGGCATTGGG CAATCGGGTA ATGGCGTTAG TGCAGGCGAT GGCCATGACG
CCGGAATTGC GCCAGAACTT GCTGTCCGTG GCCAATGATG AGTGGGGGTG CCAGGACGGT
GCAACCTGGT GCTTGAGCAA CCTCGAACTG AACATGCTTG TCTGGCAGGT AGAACATGCC
GCTGGAGAAC ATAGCGAAGG CGCCTTGCTT GGCCTGGGAA GACGCTTATG GCGCCAGGAT
GCAGTCGACA GGTTCGCCAG CCGATGGGCA ATCCAACACG CCAGGGCGCT GGAAGGCAGC
GAAGTGGGGT TGGCCTTCAG GATCGGGCTA AGGGAGCGGC TTGACTTGCC CCTGCAGGTG
GGGGAAATGA GCTTCCAGGC TGTTTCAGGC GTTTTGGACG CGGACCTGGC AGAGGCAGAA
GCCGCTGTGC GGAACGCGGA AACCCCGGAT GAGATCGCAC GTTCAATGGT TGATCGTGAA
TTTTGGCAGG CGCACCTGGA GCGTACCCAT CCTGACCAAT TCGCTGCGGT CGACTTGCCC
TTCAGGCGAC AGCTTGAAAC GGTACTTGAC GATGAAGCGC TCCTGGAGGG CGCAAAGATC
GAGCAGGCGG ATGCCATTCG AGATGCGCAG CGTGCTGCAC GCAGGGGGCT GATGCTGGAC
ATGACGATTC GTGCGATGGA AGCGGGGCCC GAGGAGCTAG GCATACCGGT GCGTTGA
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| Protein sequence | MDTTPLSSAQ AAIDAFQDGI IGKRLPLWLR QAPAEQLPEI SMALANSLRC REQVNALLRG
IESIDSFVAA GLEKALGERY GIVRNARALR FLEGRREPVI NSQPVGAHLT EVVYEEKPLL
EVVLRNFTAE QAQAGGQPRG NRLLVSRQGR GAPPTSIELA TLCRELDLGA CYQRHLDSIL
KPAGDARRVE SQLGDTSRYA MLVDAYKARQ EGKLDDSELK LMVTVCADGK LLRLAGDRVE
ARQLKLLGCL IEQVIVFEVI DQGVLFNTTR RVLLYVPGDP VSPWSVFDSI DKLNRELGRR
FRDKAYQRFF SRFVLRRDSQ AFFAQVMALF DDLAVWAFRD LEPRLHPYPQ PLFNSLAQAR
MRQIKEDAAM IAVPVARLDR EVQRQHDERL EAEGWAVLNL ASFFVPGLGV ALLAVTAWEL
LGEVYHGFEA WQEGDRQAAL DHLTHVATDL AVLATTVAGV AVARRIWARS ACVDAMLPAR
LEDGTVKLWQ LDLTPFQSQA PVAATGQDAL GIRRLDGQAW IEMDGYDYRV MAPAGDGQWQ
LCPVDGHGPM LRHNGAGAWR LWSEQPSQWA DRYRMFRRFG GAFSRLGDEE IDQVLLLHDL
DGDDVRSLHV HAQAPSPGML DSVLRVKLDQ RIRSMIGCLR SGMPVEDVTV LEHARRLPGA
DGLPDQALAE LAWTQRRTLL HHLYEALQPT DSPGSAALRR VFPGLHVRAA QALVKAANGV
ERKRLLSSGR VALGLAEAAR GSLSAMRQVR VLEALYLDTP QNADLARVAL GLLRYLPGSE
QGVRWRLYEG YLDGPMLAQT EQGQRAFDLV HLNGRFQLLD DQGKALGAPG ELFDVMALAY
TDEQREAMRV GEPFSHNLRV LLGREAVSRR DEIARLLGAV RPGAVRMPLR LADGRLGYPL
GGAGVSGFAS RGRALRATLR DLFPWLSDVQ IETLVDEARR SGHQLERVLS DLSNELTVLR
NTLDTWVAQG QGEAREDRDA LRQTLFNCWR RSVGVGALQI DAQQNLHAIF CNFRLDGLPS
MPAQVSFRGV TSLSMLHLNL LEVPNSFLLA FPNLQTLDLG GNLLTRLPQP LLQIPQLRHL
SLTHNRIRLN MEQTATLASC TSLESLDLSH NPLGRPFPLA GLTELRWLNL RDTHITQFPA
GVFERAQLVS VDLRENRIRH IPEQFFQMPV WRRRRIRLSA NPLGEAQMGR LRASLRSDVP
VVDEEQVFLR LQHAREVWGD AVAPEHRGLM LAAWDSLDER QDAGRFFRVL GQLLLSEDFR
VNARALGNRV MALVQAMAMT PELRQNLLSV ANDEWGCQDG ATWCLSNLEL NMLVWQVEHA
AGEHSEGALL GLGRRLWRQD AVDRFASRWA IQHARALEGS EVGLAFRIGL RERLDLPLQV
GEMSFQAVSG VLDADLAEAE AAVRNAETPD EIARSMVDRE FWQAHLERTH PDQFAAVDLP
FRRQLETVLD DEALLEGAKI EQADAIRDAQ RAARRGLMLD MTIRAMEAGP EELGIPVR
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