| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_1976 |
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| Symbol | |
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| ID | 5869766 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | + |
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| Start bp | 2220117 |
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| End bp | 2224298 |
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| Gene Length | 4182 bp |
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| Protein Length | 1393 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 641547103 |
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| Product | leucine-rich repeat-containing protein |
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| Protein accession | YP_001668215 |
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| Protein GI | 167032984 |
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| COG category | [S] Function unknown |
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| COG ID | [COG4886] Leucine-rich repeat (LRR) protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 0.0369869 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTACTT CTGTAATACC TGCTGACTCC ATCGATGCGC TGATTGCCAG CCGACTGCCA
GGTTGGCTCA AAGGTGCTTC AGCCGAACAC CTGGCTTTAT TGCGTGTGGC GTTGCTGCGT
CAACAAAAAG CCCAGGACGC CCTCAACGCC CGGCTGCAAG CCATCAGCCC CCTGGAAACC
TTTGCCGAGT CGTTGCTTGC AAGCGCGCTC GCGGAGCACT CGATCACGCA GCTAGACCTG
CACTTGGCCC AGGTCACCCT GGTGACCCGG CGACTGAACC CGCCGATAGC GCCCTCCTTG
CCACTGTATT GGTCGCAAAT TGTCAGCACC CAGGTGCTTC TTTCAGCGGC GCTGCATAAC
TTTCACGAAA ATGAAACGCT GCCTGGCTGG TTCGCTACAG GGTCACAGTT GGTCGATGCG
AGTGGGCAGG TGCTACCGCT GAGCGTGAAG GCATTCGTCG AGCTCTGCCG ACGGCTCGAT
ATCGGGCGGC AGTATCAAAA CCACTTGAAA TTGCACCTTG AAGGCGAGGT GATCACCGAA
GTCATGGAGG AGGCGTCAAG CGCCAACCTG GACGCTGCGG CCATCCTCGC CAGGACCAAG
GGTGAGATCG ACGAGCAGAC GTATCAACGT ATTGCTCGCA TTGTGAACGC AGCACCTTTG
TCGCCCGCCG ACAATACTGT GTTGAAGTGC CATACCTTGA GGCTGCTGGG CAAGCAGGTC
GTTGGTGCAC TTGTGATCGA AGTGCGTCAG CACGCTGAAC TACTAGGAGT TATCGCGTGG
TTTCCCGAGG ACCCCTATGC CCCGGTGAGC GGGTATGCAA CCTGGGAGCT GCTGTACACG
GCGCTTGGCG TACGTTTGCG CAGCGAAGCG TATCGCAAGT ACTTCCAGCG TTTTATCGCA
GAGCGTGATC GGGTCGCCTT CCATACGGCC CTGAACTTGC AGCTCACGCA AGACGATACA
GGTTCACCGC TTGAGCTGGA TGGCCGCTGC TTTGTGGTCG AGGGGGGCGT GTTCGTCGCA
CTGCGCAAAG CCCGTCTCCA CAAAATACTG GATGACGCTC GGGTTTTGGC GGTGTCGACA
GAGGATGAGG ATATCGCCGA CCGCCACGCA CGCTTACAAG GTTATCTGAA CTTGGGGCTT
AGCATTGCAG GCCTGGCCGC GCTGTTCGTG CCGGTGTTGG GTCAGGCCTT GCTTGGGCTG
ACGGCAGTGC AATTGGCGGA CGAGGTGTAC GAAGGCTACC AGGATTGGCA ACTGGGCGAC
CGCAACGCCG CATTGGGGCA CCTGTTCAAC GTGGCCGAGA CGGTGGCGCT GGGGGCGGTG
ACGGCCGCCG GCACGGCGGC ACTCGGCAAG CTGGCCCAGC GAGTGGCACG CGTAGATGCC
ATGGTGCCGG TGAGTTTGGA GGATGGCCAG TTACGCTTGT GCGATCCAGC GCTGTCGGCG
TATCAGCATG ATGGCGTCAA TTTGATCGTT GGGCAGGCGG CCACTGAAAA TGGCCGAACG
CTGAGGCGCC TGCACGATGC TACCTATGAG GTAAGCGAAC ACAGCGATGG CACATTGCGT
ATTCATCACC CCACGCGGCC GGGGGCCTAT GTACCAGCTC TTGAACACAA TGGTGCCGGA
GGATGGGTGC ATGAGTTTGA GCAGCCGCAG TGCTGGCAGG ACGCCGCTTA CATGGTGCGC
CGCCTTGCCA GCCGCACGGC CCAAGTGTCC GACGAGGCGG CGTCTGTTGC GCTACAGGTC
ACCGGTTTCG ATGCAGATTG CCTGCGCCGT TTGTTACTGG AAAATGCGCC ACCCCCGGCA
CGCTTGCTCG ACGCCCTTGA ACGTCAGCAA TTGCACCATG ATTACCCGGC ATTACGGGGC
GGTGCTTTCG AGGAATTGTT CAATGAGCGG CAGGTCAATC CGCAGGCAGC GGACCACCTA
TTGATGCGGA ACTTCCCAAG CCTTTCCCAC CGCTGCGCAT GGGAAATCGT TGAAGGGGCA
AATAGCGACG AACTGGAAAG CCTGACCAGC GCAGGGCGGG TACCGTTGGC TTTGGCGGAG
CGGGCGCGCT GGGCGGTGCG CGACAGCCGG ATAGACCGTG CCTGCGCAGG TTTGCGCCAG
GCCTCTGCCG CAAATGACGA CAGCGCAAGG CTCGCGCGGG GGCTGATCGA TGCCATCGCA
CCCTGGCCGG CTGGGGTCGA GGTTGAACTG CCTACCGCTG ACCAGGGTGG GTTATTGCAA
GCGTTAATGC GGCAGCTGGA CAGCCGCCAG CTACAACTGC TCGGCGGTAG CCAAATGACG
GAAAGCGCGC TGGGCGAGCG GCTTGGGCGT GAAGCGCTTG CTGACCGTGA AGCGGCGGCC
CGTTTGATTG GGCTGGCCCG GGTGGGGCAG GGTATACGCC CTCCTGTGCG TTTATACGAT
GGGCGTTTGG GCTATCCGCT CAGCGGCCAC CTGTCGGGGA CGCGCCAGGC ACTAAAGCGC
ACGTTGAATC ACGTGTACCC GCTGATGAGC AACGAACAAT TGGAGGCGTA TCTGCAAGAC
CTGGCTCAAC GGGGGATTGA CCCGTGGAAC CATGTCAGCC AGCTGTTACG GGCCAAGTTT
AGTCTCAAGC AGGCATTGCA AAGCTGGCGG AATGAAACGG GGCTGAACAT TATTCGCCGG
TTGCGTCGCA TCAAGGTTGC CAGGCGCATT ATGGCGAGTT GGCAGCGCAT GAACCCTGGG
GAGTTGACGG GTGATTATCA CCTGACGATC GCGGGTGACA GAGTGGGTGA CTTGCCGTCC
TTGCCCGAGA ACGTGGCTTT TGACCATATC ACGCACCTGA CCCTACGTGA TATGCGGATG
GCGGCCCTTG ACGCGGGTTT CCTTGCTCGC TTTAGCAAGG TGCGTAACCT GGATTTGCGT
GGCAACCAGC TTACACGCCT TCCTGCAGGT ATCGAGCAAC TGGCCGAATT GAGGAACCTA
CGCCTTGGTG GCAATCGGAT CGTTCTTTCC AGCGACGATA ATCTTCGCTT GAGCCAGCTT
GTGGGGCTGC GCCGTCTGGA GCTCAACGGC AACCCTGTGG GCCTGCTGCC ACCCTTGACA
TCATTCCCCT TGCTGCGCCG TTTGTCCTTG CGCAACACAG GGCTGGGCAA CTTGCCAGCT
GAATTGGCCA GGCACGGAAA TCTGGAGTTG CTGGACATGC GTGGCAACCA GATCCAGACG
TTGCCTGAAG CGCTGTCCAT GTTGCCGCTA CGTTTGCTAG GGGGGCTGGA GCTGCACGAC
AATCCACTCT CGGATGAAAC CCTCCAACGC TTGCAATTGG CCAGGGCCGC AGCGGGGGCA
TCTGAGCGTA CGCAAGCGAC TCACCTATCG ATTGACGCCA GCGACGCAAC CCCATGGTTG
TCAGGGTTTA CTGCGGCACA ACGCGAAGTT CGATTGGCGC GTTGGAACCT GTTGCGCCAA
GAGGACGGGG CGAGTGATCT GTTCCAATTT ATCGCTGATT TGCAGGATTT GCGTGAATAC
CACGCACGCC CCCGTGACCT TCAAGCGCGC GTGTGGCATA TCCTCGAAGC GTGCGAGCAG
CACGCCGAAG TGCGTGCCAG CCTTTTCGAG CAAGCTAGCC GGCCGCGCAG CTGCAGTGAC
GAGTTGCTGC TGACGCTGAG CGAGCTGGAG GTTGGCGCGA TGGCCTCCAG GGCTGCATCG
GCCAGTAGTG GTTTGCAAAG GGAGCGGGCG CTGGTGATGC TGGGGCGTTC GTTGTCTCGT
CTGGACAAGG TAAACGCGAT AGCGGCACGG CATATCGCCC ACTATTACTC GGACGATCCC
GTCGAAGTTT ACCTGGCCTA TCGTGTCAAA CTGGCTGAAA GCCTCGACCT CCCGGCGCAG
CCTGAACATA TGGCGTACGA GAGTGTAAGC GGGGTTAGCC ATAAAGACCT GGAGTCGGCC
CGCAGCGAGG TACTGCGGGA GGAGACGCCA CAATCCTTGG CTCAAGCGCT TGCCGATCGA
TCCTTTTGGC AAGATTACTT AAGCAGTCAC CAATCGGCGC GTTTCAGCCG CATGAACGAG
CCGTTCCAGC AGCGCCTGGA TACATTGCTC GAGCAATCGG AAGCGCTAAG CGATCATGAC
TACCTCATGC AAACCGAGCA GATCAGTGCA GAGCGTGAGG CAGCGCAACG CCAGCTTTTT
CTTGAGTTGA GCCGCGAGGC CATTGAGCGC CAGGGCCTAT GA
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| Protein sequence | MATSVIPADS IDALIASRLP GWLKGASAEH LALLRVALLR QQKAQDALNA RLQAISPLET
FAESLLASAL AEHSITQLDL HLAQVTLVTR RLNPPIAPSL PLYWSQIVST QVLLSAALHN
FHENETLPGW FATGSQLVDA SGQVLPLSVK AFVELCRRLD IGRQYQNHLK LHLEGEVITE
VMEEASSANL DAAAILARTK GEIDEQTYQR IARIVNAAPL SPADNTVLKC HTLRLLGKQV
VGALVIEVRQ HAELLGVIAW FPEDPYAPVS GYATWELLYT ALGVRLRSEA YRKYFQRFIA
ERDRVAFHTA LNLQLTQDDT GSPLELDGRC FVVEGGVFVA LRKARLHKIL DDARVLAVST
EDEDIADRHA RLQGYLNLGL SIAGLAALFV PVLGQALLGL TAVQLADEVY EGYQDWQLGD
RNAALGHLFN VAETVALGAV TAAGTAALGK LAQRVARVDA MVPVSLEDGQ LRLCDPALSA
YQHDGVNLIV GQAATENGRT LRRLHDATYE VSEHSDGTLR IHHPTRPGAY VPALEHNGAG
GWVHEFEQPQ CWQDAAYMVR RLASRTAQVS DEAASVALQV TGFDADCLRR LLLENAPPPA
RLLDALERQQ LHHDYPALRG GAFEELFNER QVNPQAADHL LMRNFPSLSH RCAWEIVEGA
NSDELESLTS AGRVPLALAE RARWAVRDSR IDRACAGLRQ ASAANDDSAR LARGLIDAIA
PWPAGVEVEL PTADQGGLLQ ALMRQLDSRQ LQLLGGSQMT ESALGERLGR EALADREAAA
RLIGLARVGQ GIRPPVRLYD GRLGYPLSGH LSGTRQALKR TLNHVYPLMS NEQLEAYLQD
LAQRGIDPWN HVSQLLRAKF SLKQALQSWR NETGLNIIRR LRRIKVARRI MASWQRMNPG
ELTGDYHLTI AGDRVGDLPS LPENVAFDHI THLTLRDMRM AALDAGFLAR FSKVRNLDLR
GNQLTRLPAG IEQLAELRNL RLGGNRIVLS SDDNLRLSQL VGLRRLELNG NPVGLLPPLT
SFPLLRRLSL RNTGLGNLPA ELARHGNLEL LDMRGNQIQT LPEALSMLPL RLLGGLELHD
NPLSDETLQR LQLARAAAGA SERTQATHLS IDASDATPWL SGFTAAQREV RLARWNLLRQ
EDGASDLFQF IADLQDLREY HARPRDLQAR VWHILEACEQ HAEVRASLFE QASRPRSCSD
ELLLTLSELE VGAMASRAAS ASSGLQRERA LVMLGRSLSR LDKVNAIAAR HIAHYYSDDP
VEVYLAYRVK LAESLDLPAQ PEHMAYESVS GVSHKDLESA RSEVLREETP QSLAQALADR
SFWQDYLSSH QSARFSRMNE PFQQRLDTLL EQSEALSDHD YLMQTEQISA EREAAQRQLF
LELSREAIER QGL
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