Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputGB1_1954 |
Symbol | |
ID | 5869744 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida GB-1 |
Kingdom | Bacteria |
Replicon accession | NC_010322 |
Strand | - |
Start bp | 2197289 |
End bp | 2199676 |
Gene Length | 2388 bp |
Protein Length | 795 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 641547081 |
Product | multi-sensor hybrid histidine kinase |
Protein accession | YP_001668193 |
Protein GI | 167032962 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 0.576685 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 26 |
Fosmid unclonability p-value | 0.0880633 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCAACAAA CGCCGTTGAA ACTACTGATG GTCGAAGACA GCTCGATGGA TGCCGAGCTT ACCCTGTTGC GCCTGGAACG CAGCGGGTTG CAAGTGCAAT CACAGCTGGT GTTCGACCAT GCGGGCGTCG AACATGCCCT GCGCGAAGCC CACTACGACC TGATCCTGTG CGACTGTGTG CTGCCAGGCT CGTCCGGCAC CGAGGTGCTG GCCATCGCCC AGCGCCTGGC ACCGGACATC CCGTTCATCT TCCTGTCCGG TATTTACGGC GAAGAACACG CGGTGGAAAT GATCCGCCTG GGCGCCACCG ACTATGTGCT GAAAAAAAAC CTGCCACTGC TGCCCAAGGC CGTGCGCAGG GCGCTGACCG AAGTACAGGA GCGCCAGCGC CGGCGCCGCG CCGAAGAAGC ATTGGCCGAC GTTGAGGCGC GTGCTTGGAT CGCCATCGAC GCTGCCGGCA TGGGCACTTG GGACCTGCGC CCGCAGGAAG GCCTGCTGGT TTGGGATGAC CGCTGCAAGA CGTTGTTCGG CCTGCCTACC AGCACCGAAA TGAGCCTTGA GGTGTTCCTC GGTGGCATCT ACCCCGATGA CCTGGCAATG GTGCGTGACG CGGTGGAATA TGCCATGCGC CCCGAAAGCG GTGGCCAGTA CCGGGTGGAG TTTCGTATCG CGCCAGTCGA TGGCCAGGAG CCGCGCTGGT TGCTCAGCAG TGGCCAGAGC CAGTTCGTCG ACGGCCAATG CGTGCGTTTT TCCGGTGTGC TGCAGGACAT CCACACGCAA CGCCTGGCCA CCCAGGCACT GCGCCAGCTG AACGAGATGC TCGGTGAACG GGTCGAGCGA CGCACGCGCG AACGCGATCG CGCCTGGGAG CTGTCGCAAG ACTTGCTGGC CGTACTGAAC AAGGACCTGA CCCCGGTCGC GCTGAACCCC GCGTGGGAGG CCAGCCTGGG TTTCTCCCGC GAGCGCCTGA GCCAGTCGTC CCTGCTGCAC CTGCTGCCCG AGCCCGATCA GGAACTGCTA CTCACCGAAC TGGCCGCCCT CGCCCATGGC CGCACCAGCG CCCGCTTTGT CGGCCGCATC CTGCATGCCG GCGGCCAGCA GCGCTGGCTG TCGTGGGTGG TGGTGCCGGA AGACACCCTG CTGTACGTGG TGGCACGCGA CATCACCAGC GAACGTGAAG CCGCCCTGGG CCTGGCTGAA GCCAACGCCC GCCTGCGCGA GCAGATCAAC GAACGCGAGC GCATCGAGGC TGCCTTGCAA CAGATGCAGA GGCTGGAGGC GGTTGGCCAA CTGACCGCAG GCGTGGCCCA TGACTTCAAC AACTTGCTCA CGGTGATCCT CACCGGTGCA AGCTTTCTTG AGCGTGACCT GGCCAAGGCC GACTTGGACA AGGCCCGCAC ACGCCTCACG CATATCCGCG AAGCGGGCGA GCGTGGCGCC AAGCTGACCT CGCAGTTGCT GGCTTTCTCC CGTCGCCAGC GTCTGGAGCC GGTAGCGCTT AACCTCAACC GCACCTTGGC CGGCCTGGAA GAGCTGCTGC GCCGTACCCT GGGTGGCAAC GTCTCGGTGC GCCTGGACCT GGACCAGGCC CTGTGGCAGG CAATGACCGA CCCGACCCAG ACCGAGATGA TCATCCTCAA CCTGGCGATC AATGCCCGCG ATGCCATGCC CGAGGGCGGA CAGCTGACCC TTACCACCCG CAACACCCGT ATCAACGGGC GCCCGCATCG CCCAGAAGAC CCGGACCCCG GCGAGTACGT GATGCTGAGC ATCCGCGATA CCGGCTGCGG CATGAGCGAC GACGTGTTGG CCAAGGTGTT CGAGCCGTTC TTCACCACCA AGGACATCGG CAAAGGTTCG GGCCTGGGCC TGGCCCAGGT GTTCGGCTTC GCCAAGCAGT CCGGGGGTGG CGTGCGCATC GATACCACAC CGGGGCGCGG CACCGAGGTG GCGGTGTACC TGCCCGCAGT AAAGGAGGAA GTGGTGGACG AACCTGCCGC AGCGGTGCTC AGCCAGTCGA GCAGCGAGAG CGGCCGTAAC CGCACGGTGC TGCTGGTGGA CGATGACCAC CTGGTGCGCG ACATGCTTGG CGATGTATTG CGCCAGTACG GCTATCAGGT GCGCCAGGCG CACAGCGGCG AGCAAGCATT GGCATTGCTG GATGACGAGA TCGACCTGCT GCTGACGGAT TTCGCCATGC CCGAGTTCAA CGGTGCGCAA CTGGCGCTGG CGGCGCGTGA GCGGTACCCG CGCCTGCCCG TGGTGTTCCT TACTGGGTAT GCCGAGCTGC AGGGGCTGGA GCTGCCGGGC AGCCTGGTGA TTCAGAAGCC GGTGCAGGCC GATGAGCTGG CCAGGGTACT GAACGAAATG CTGGGCATTG CCGGGTAA
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Protein sequence | MQQTPLKLLM VEDSSMDAEL TLLRLERSGL QVQSQLVFDH AGVEHALREA HYDLILCDCV LPGSSGTEVL AIAQRLAPDI PFIFLSGIYG EEHAVEMIRL GATDYVLKKN LPLLPKAVRR ALTEVQERQR RRRAEEALAD VEARAWIAID AAGMGTWDLR PQEGLLVWDD RCKTLFGLPT STEMSLEVFL GGIYPDDLAM VRDAVEYAMR PESGGQYRVE FRIAPVDGQE PRWLLSSGQS QFVDGQCVRF SGVLQDIHTQ RLATQALRQL NEMLGERVER RTRERDRAWE LSQDLLAVLN KDLTPVALNP AWEASLGFSR ERLSQSSLLH LLPEPDQELL LTELAALAHG RTSARFVGRI LHAGGQQRWL SWVVVPEDTL LYVVARDITS EREAALGLAE ANARLREQIN ERERIEAALQ QMQRLEAVGQ LTAGVAHDFN NLLTVILTGA SFLERDLAKA DLDKARTRLT HIREAGERGA KLTSQLLAFS RRQRLEPVAL NLNRTLAGLE ELLRRTLGGN VSVRLDLDQA LWQAMTDPTQ TEMIILNLAI NARDAMPEGG QLTLTTRNTR INGRPHRPED PDPGEYVMLS IRDTGCGMSD DVLAKVFEPF FTTKDIGKGS GLGLAQVFGF AKQSGGGVRI DTTPGRGTEV AVYLPAVKEE VVDEPAAAVL SQSSSESGRN RTVLLVDDDH LVRDMLGDVL RQYGYQVRQA HSGEQALALL DDEIDLLLTD FAMPEFNGAQ LALAARERYP RLPVVFLTGY AELQGLELPG SLVIQKPVQA DELARVLNEM LGIAG
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