| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_1909 |
|---|
| Symbol | |
|---|
| ID | 5869698 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | + |
|---|
| Start bp | 2149856 |
|---|
| End bp | 2150635 |
|---|
| Gene Length | 780 bp |
|---|
| Protein Length | 259 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 641547035 |
|---|
| Product | CHAD domain-containing protein |
|---|
| Protein accession | YP_001668148 |
|---|
| Protein GI | 167032917 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG5607] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 0.218581 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.00000249861 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGTCTGCCA TGCTCGATCA TGTCGTAGCT CAGATTCTGG CCGTGCAGGT GCGCCTGCTG
GCCTGTCGCG AGCGCTTGGC TGCCAATACC GACAGCGAGG CCTTGCACGA CCTGCGTATC
ACCTTGCGCC GGCTGCGCAG TCTGCTGCGG CCGCTGCGCG GCCTGCCTGG CGTGGAGCAA
CTGGAAGATG CCGCCAGCGC GCTGGGTACC CTGACCACGC CGCTGCGTGA TCGCGAGGTG
CTGGCGGCTG AGCTGATCGG GCGCGGCCAA ACCGCGGCCG GCCAGCGGCG CCTTCAGGGG
CGTGACAGAA CCTTCGCCAG TGTCGCTGCT AGCCCACAGC TGGCAAGGGT GCTGGCGATT
GTCGACGCGT TTCCACTGTT TCTGCGTGCG GCAGGCCGTG AGGGTTTGGT CAAGTCGCTG
GGCAAGCGCA TCGACAAACG CCTGGTCAAG CAATGGCGCA GGTTGAACGA AGCGCTGCAG
GACCCGGCCC ACGATCGTCA CCGGCTGCGT TTGCTGATCA AGCGTGCGCG CTATGGCGAT
GAGGCATACC CGCAGCTCAA CCATGCAGGC AAGAAACTGC AGCGTTTGCT GAAGCAGGCG
CAGGGCGACC TTGGCAACTG GCACGACCGC CTGCAATGGC TGCTGCAAGT GCGCGATCAT
GCCGACCTGG CCCCCTGCAA GGCGGCTTGG GAGCATGAGC TGCACGAGGC TGAGCGCCAA
TCGGATGTGA CCCTCGATGC CCTGCAACGG GCGCTGGCGC GGCGCCAGCC CGAAAAATGA
|
|---|
| Protein sequence | MSAMLDHVVA QILAVQVRLL ACRERLAANT DSEALHDLRI TLRRLRSLLR PLRGLPGVEQ
LEDAASALGT LTTPLRDREV LAAELIGRGQ TAAGQRRLQG RDRTFASVAA SPQLARVLAI
VDAFPLFLRA AGREGLVKSL GKRIDKRLVK QWRRLNEALQ DPAHDRHRLR LLIKRARYGD
EAYPQLNHAG KKLQRLLKQA QGDLGNWHDR LQWLLQVRDH ADLAPCKAAW EHELHEAERQ
SDVTLDALQR ALARRQPEK
|
|---|
| |