| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_1855 |
|---|
| Symbol | |
|---|
| ID | 5869635 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | + |
|---|
| Start bp | 2084334 |
|---|
| End bp | 2084867 |
|---|
| Gene Length | 534 bp |
|---|
| Protein Length | 177 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 641546972 |
|---|
| Product | XRE family transcriptional regulator |
|---|
| Protein accession | YP_001668094 |
|---|
| Protein GI | 167032863 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1476] Predicted transcriptional regulators |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 36 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 0.21785 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCTGCAAC ATGTCAGCCT CAATGTGCGC AGCCTGCGCA ACGCTGCCGG AATGAGCCAG
ACGGCGCTTG CCGAGCGCTC CGGGGTCAGC CGCCGCATGC TGGTAGCGAT CGAGGCGGGC
GAGAAGAATG TCAGCTTGAC CACCCTGGAC TTGATCGCTG AAGCCTTGGG CGTGGCCTTC
AGTACCCTGA TCCAGGCGCC AGACCTGCGC GACCCCGGGC GCATCGAAGA GCTGGCCTGG
GCTGGCGAAC ATCCGCAGAG CAGGGCGGTG TTGCTTGGCA CCAGTGCGGC ACGGCGCGAG
GTGGAGCTGT GGGAGTGGAC CCTCGCACCG GGCGAGTGCT ATTCCAGCGA GGCTGATGCC
GAAGGCTGGA GCGAGCAGAT TTATGTGGCC GAAGGGCAAT TGACGCTGAT CATCGAAGAT
GTCGAGCATC GCTTGCAGGT GGGGCAGTTC CACGTGTTCC CCAGCAATTG CCGGTATGCC
TACCGTAACG ATGGCGCGGT GGCGGTGCGG TTTGTGCGCA ATGTGGTGAT TTGA
|
|---|
| Protein sequence | MLQHVSLNVR SLRNAAGMSQ TALAERSGVS RRMLVAIEAG EKNVSLTTLD LIAEALGVAF
STLIQAPDLR DPGRIEELAW AGEHPQSRAV LLGTSAARRE VELWEWTLAP GECYSSEADA
EGWSEQIYVA EGQLTLIIED VEHRLQVGQF HVFPSNCRYA YRNDGAVAVR FVRNVVI
|
|---|
| |