| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_1790 |
|---|
| Symbol | |
|---|
| ID | 5869570 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | + |
|---|
| Start bp | 2007681 |
|---|
| End bp | 2008892 |
|---|
| Gene Length | 1212 bp |
|---|
| Protein Length | 403 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 641546907 |
|---|
| Product | major facilitator transporter |
|---|
| Protein accession | YP_001668029 |
|---|
| Protein GI | 167032798 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 34 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 44 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTTTTCG AGGGTGAACG CAATAGGGTC GTGTCAAAGC CCCTGTTCAG CGTGTTCTGT
TTTGCCAGTT ACTTGCTGTC GTTGTCTTAT GGCTCGACCT TCCTGCTTGC ATTGCTGGTG
GCTACCCAAG GTGGCAACGA GCAGGATGCG GGCCATGTGA TCTCAGCCGC CATGTTGAGT
ACGTTTGCTG CCGTGCTGGT TTCCGGGCAC TTGTCAGATC GCCTCGGCGC TGCACGCTCG
ATTGCTTATT GCGGTCTGGC ACTGGTGGCT GCGAACGTGG GGTTTGCCAT GAGTGCCAGC
CATACAAACC TGATGATGAT GTTCGGCTTG CTGCTGGGCA TAGGCTGGGG CGTTTTCTAT
ACCCTGGGCC CGATCATCGT GGCAACGATC GTTCCCCCGG CACAGCGCTC GCGCTATTTT
GCATTGCTCT CGGGCAGTAT GATGAGCGGC ATTGGCTCGG CGCCCTTGGT CGGGCGCCTG
GCTAGCCAAA TGGGTTTGCC GGTCACTGCC ACCTTTTTTG TTGCAGCACT GGCTAGCCTG
ATCGGCGTAG TGCTGTTCTG GCGCATGGCC AATGCGTTCG TCCAATTACC CAATCGCTTT
AGCGCATCAG TGTCCAGACT GTCCTGGCAG GCAACGCAAA AAGTCCTGGG CTCAAGGGCT
GTATTCCCGA TCCTGATGGT AGGCCTGGGC GGTGCGATCT TTGGCGGGCT TTCAAGTTTT
CAAACCAGCT ATGCCCATGA AAAAGCCCTC GACTACTCGG TTTTCTTCAT AGGTTTCATG
AGTGCTGCCA TTGCCGGGCG CATGTTTGTA GCGGGGGTGG TGGTAAGGCG CGATCCCTAT
CGGATGTCGT GTCTGCTGTC CGGGCTGATC GTAGTGGCGT TATTGATGTT CAAATACGTT
GTTGCCGGGA ACCTTGGGTA CATCCTGGCA GCGGTCATTC TGGGCGTTGG CTATGGCCTG
ACCTATTCGG TGATCAACGG CCTCGCGGCG AACGAGGCAC CAGAGGGCAC AACCACGCAG
TCTCTGCTGC TGTTCAGCCT TTCTTATTTT GTTGGTGTAT TCGGGTTCCC GTTCCTTGCC
GGCAAAATCA TCATCGACAA AGGTTTGTCG ATGATGCTGT TGATCCTGCT GGGGGTATCC
GTGCTCAATT GGTCGATTAC GCTCGGACGG CTGGTGTGGC GCAAGGGCAA CTTGCACAAC
GCCATGGCGT AG
|
|---|
| Protein sequence | MVFEGERNRV VSKPLFSVFC FASYLLSLSY GSTFLLALLV ATQGGNEQDA GHVISAAMLS
TFAAVLVSGH LSDRLGAARS IAYCGLALVA ANVGFAMSAS HTNLMMMFGL LLGIGWGVFY
TLGPIIVATI VPPAQRSRYF ALLSGSMMSG IGSAPLVGRL ASQMGLPVTA TFFVAALASL
IGVVLFWRMA NAFVQLPNRF SASVSRLSWQ ATQKVLGSRA VFPILMVGLG GAIFGGLSSF
QTSYAHEKAL DYSVFFIGFM SAAIAGRMFV AGVVVRRDPY RMSCLLSGLI VVALLMFKYV
VAGNLGYILA AVILGVGYGL TYSVINGLAA NEAPEGTTTQ SLLLFSLSYF VGVFGFPFLA
GKIIIDKGLS MMLLILLGVS VLNWSITLGR LVWRKGNLHN AMA
|
|---|
| |