| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_1605 |
|---|
| Symbol | |
|---|
| ID | 5869385 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | - |
|---|
| Start bp | 1812060 |
|---|
| End bp | 1813325 |
|---|
| Gene Length | 1266 bp |
|---|
| Protein Length | 421 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 641546723 |
|---|
| Product | nitrate-binding protein NasS |
|---|
| Protein accession | YP_001667846 |
|---|
| Protein GI | 167032615 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0715] ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 0.0550042 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGTTGCA CCAATCCACC CACAGCCTTA TCAGTACTGG CGAGGACCCT TGTGAACACC
GCACCCCGAG CAACGCCCCT GGCCTGGGTC AACGGCAGCG ACGCGCCAGA AAAGCCCAGC
CTGAACATCG GTTACATGGC CCTGACCGAC TGCGCGTCGG TAGTGGTCGC CGCCACCCAG
GGCTTCGCCC AGCAGCACGG CCTTACTCTC AATCTCAAGC GCCAGGGCTC GTGGGCCGGG
TTACGCGACA AGCTGGTCAG CGGCGAACTG GACGCCGCGC ATTGCCTGTA TGGCCTGGTC
TACGCCGTAC ACCTGGGCAT CGGTGGCGTG CCCGCCTACG ACATGGCCGT GCTCATGGGG
CTGAACCAGA ACGCCCAGAC CATCAACCTG TCGCCGGCCC TGCAGCGCAA GGGCGTGACC
AACCCTGAAG CGCTGGCGCG CCTGGTGCAC CAGCATGGCG CACGCCTGAC ATTCGCCCAG
ACCTTCCCCA CCGGCACCCA TGCCATGTGG CTGTATTACT GGCTGGCCAG CCAAGGTATC
CACCCACTGC GCGACGTCGA CAGCGTAGTG GTGCCACCGG CGCAGATGGC TGCACACATC
CAGGCCGGGC GCATTGACGG TTTCTGCGCG GGTGAACCGT GGGCCGCCGA CGCTGTGGCC
AAGGGCCAAG GCTTCACCTT GGCCACCAGC CAGTCGATCT GGCCGGATCA CCCGGAAAAG
GTCCTGGCCT GCGCGCGCGC CTTTGCCGAG CAATACCCCA ACAGTGCCCG CGCGCTGATC
AAGGCGATCC TCGCGGCCAG CCGGTTCATC GAGCAAAGCC CGGAAAACCG CCGCAGCACC
GCGCAACTGC TCAGTGGCAG CGCCTATCTG GATACCCCAC TGGACACCAT AGAACCGCGG
CTGCTCGGCC ACTATCAGGA CGGCCTGGGC AACCATTGGC AAGACCCGCA CGCCCTGCGC
CTGTTCGACC AGGGTCGGGC CAACTGGCCC TACCTGTCCG ACGGCATGTG GTTCATGACC
CAGTTCCGCC GCTGGGGGCT GCTGCGCGAA GACCCCGACT ACTTGGGCGT GGCCCGTCAG
GTCCACCAGC TGCGGCTGTA CAGTGAGGCC GCGCAAAGCC TGGGCATCGC CTGCCTGGAG
CTACCGATGC GCAGCAGCCT GCTGATCGAC GGCACCCGCT GGGACGGCAG CGACCCCTAC
GGCTATGCCC GCAGTTTCAG CCTGCACGCC TTGGGCGACC AGCCCAATGC CCGTGTCGGC
CTGTGA
|
|---|
| Protein sequence | MGCTNPPTAL SVLARTLVNT APRATPLAWV NGSDAPEKPS LNIGYMALTD CASVVVAATQ
GFAQQHGLTL NLKRQGSWAG LRDKLVSGEL DAAHCLYGLV YAVHLGIGGV PAYDMAVLMG
LNQNAQTINL SPALQRKGVT NPEALARLVH QHGARLTFAQ TFPTGTHAMW LYYWLASQGI
HPLRDVDSVV VPPAQMAAHI QAGRIDGFCA GEPWAADAVA KGQGFTLATS QSIWPDHPEK
VLACARAFAE QYPNSARALI KAILAASRFI EQSPENRRST AQLLSGSAYL DTPLDTIEPR
LLGHYQDGLG NHWQDPHALR LFDQGRANWP YLSDGMWFMT QFRRWGLLRE DPDYLGVARQ
VHQLRLYSEA AQSLGIACLE LPMRSSLLID GTRWDGSDPY GYARSFSLHA LGDQPNARVG
L
|
|---|
| |