Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputGB1_1546 |
Symbol | |
ID | 5869326 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida GB-1 |
Kingdom | Bacteria |
Replicon accession | NC_010322 |
Strand | + |
Start bp | 1739314 |
End bp | 1740201 |
Gene Length | 888 bp |
Protein Length | 295 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 641546664 |
Product | rhomboid family protein |
Protein accession | YP_001667787 |
Protein GI | 167032556 |
COG category | [R] General function prediction only |
COG ID | [COG0705] Uncharacterized membrane protein (homolog of Drosophila rhomboid) |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 29 |
Plasmid unclonability p-value | 0.493035 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 33 |
Fosmid unclonability p-value | 0.546364 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAACATTA TCGAAGTGAT GCGCCTGCCG CTGTCGGTCG ACCTCAGCGG CTTCGTTCAC CTGCTGCAGC GCCTGCAGGT GCCACACCGG GTCAGCGAGG AGGGCGATGC CCAGGTCCTC TGGGCCCCCG ATACCCTGGC CCAAGACGTG CTGCAGCTGT ACCAGCGCTA CCCCGACGGC AACGCCGACC TCGAACTTGC ACAGGACCCT GGGGGAGCGG GCCTGCCCGC GAATAGCCCC GCACAACCCT CCCTGGTAGA ACAAGCCAAA GCCTGCAAGG TCACCACCCT CACTCTGCTG CTGTGCTTCA TTGTCGCCGG CCTCACCAGC CTGGGTGACA ACTTCACCAC CATCAGCTGG TTCACTTTCC TCGACTTCCG CGTCCAGGGC GACTACCTGT ACTTCAGCTC GCTGGCGCAA AGCCTGGACG AAGGCCAGTG GTGGCGCCTG GTATCGCCCA TGCTGCTGCA TTTCGGCGTG CTGCACCTGG CCATGAACAG CCTGTGGTAC TGGGAGCTGG GCAAGCGCAT CGAGCTGCGC CAAGGGCCCT GGATGCTGCT GGGCCTGACC CTGTTGTTCA GCCTGGTTTC CAACCTGGCC CAGCACTACA CCAGCGGGCC AAGCCTGTTT GGCGGCCTGT CCGGCGTGCT GTACGGCCTG CTCGGGCATG TGTGGCTGTT CCAGTGGCTG GCGCCCAACC GTTACTTCAA CCTGCCCAAG GGTGTGCTGG TGATGATGCT GATCTGGCTG GTGGTGTGCC TGACCGGTGT GGTCGGCACC CTCGGCCTTG GCCAGATCGC CAATGCCGCC CACGTCGGCG GGCTGCTCAT CGGATGCCTG ACCGGGCTCT TGGGTGGGGC GCTGGCCCGG CGTAAACTGT CGGCTTGA
|
Protein sequence | MNIIEVMRLP LSVDLSGFVH LLQRLQVPHR VSEEGDAQVL WAPDTLAQDV LQLYQRYPDG NADLELAQDP GGAGLPANSP AQPSLVEQAK ACKVTTLTLL LCFIVAGLTS LGDNFTTISW FTFLDFRVQG DYLYFSSLAQ SLDEGQWWRL VSPMLLHFGV LHLAMNSLWY WELGKRIELR QGPWMLLGLT LLFSLVSNLA QHYTSGPSLF GGLSGVLYGL LGHVWLFQWL APNRYFNLPK GVLVMMLIWL VVCLTGVVGT LGLGQIANAA HVGGLLIGCL TGLLGGALAR RKLSA
|
| |