| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_1461 |
|---|
| Symbol | |
|---|
| ID | 5869230 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | + |
|---|
| Start bp | 1638966 |
|---|
| End bp | 1642904 |
|---|
| Gene Length | 3939 bp |
|---|
| Protein Length | 1312 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 641546568 |
|---|
| Product | YD repeat-containing protein |
|---|
| Protein accession | YP_001667702 |
|---|
| Protein GI | 167032471 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 0.679984 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCTGGCA AAACGGCATT GCACTCCGGT GCGTTCAATT TCTTGAGTTT CATCAGTAAT
GGTGTTGATC CGCGTACAGG CCAGTATGGC CTGAGTATCG CGTTGCCTGT GTTGCGTGGT
GATTATCTGG GGGGAGCGGA GTTTCCATTG AAGCTCAGCT ACAACTCCAT GGGGGCGGGT
GACTTTGGTT ATGGGCAAGG TTGGGATATC AATCTCAGCA GTTTCATCGA GGATGCGTAC
CCTGCCGGAG GGGGGGCACT TTCGCTCTAT ACCGGTGAGC GATTTACAGT GGATGGCGTG
GAAAGTATCA GCGAGAAAAA GCTGGACTCT TTCCATTTTC ACAAGGATGG CGATGGGCTG
TATCGGGTCG AGCACAAGGA CTCCTCTCTG ACGGAAGTGC TGCAGCCCAC CAACATCGGG
ACAAAAAAGT TGATGCTACC GAAAAAGCTC TATGCCGATT CGAGGCGTTA CTTGGAGTTT
GTCTATCGTG ACAATCCACA ATTGCCAAGC ACCCCCTGCC TGAGTGAAGT GTTTGATTCA
GGCGTGGGTG GGGGGCGGCC GGCTCGCCTG TTGTTGATCG AATACTCGGG CGATATGATC
ATCACCCTGT ACCCGGATCA ACCTGATGCC AGGGCCAGTT ACACGCTCAA GTTTAACGGG
CGGCGGCTGG AGCGTGTGGT GCTGCCCACC AATGAACAGG CGTACTGGGA GTTTTCCTAC
CAGCAGGTGC ATGGGCAAAC CTGTGTGAGC CGCGTGCGTA CGCCGACCGG TGCGGTCGAA
CATATCGAGT ACGGTGTTGA CGGTGACCCT GGCCACAAGC TCCCAGGGGT TGAGCAATAT
TTGCCGCGGG TCAAGCGCCA CAGCATTGTT CCGGGTTTTG GCCAACCCGA TACAGTGACC
GAGTATGACT ATTCCACGAC CAACTTCGTG GGCAATGGCA GCTCAATCGT CTGGAACAAC
AATGGCCGCG ATAACCTCTA CGAGGTGACG GATGCCAACT ATTCCTATTG GAGTAAAACC
ACCGAGCGCT GCCCAGGACA GGCGGATCGC ACCGTCTTGT CAACCTACGA CCGCTTCCAC
CGCAGTGTCG AGGTAAAACA GGTTCAGGGC CAATGTGTGA ATACCACGGT CAGCCAATAC
CCTGGCAATC CGGCGGAGCC CTTCATAAAG CAACCTGCGA ACTTCCAGCT GGCGAGCCTT
TCGACCCAGA CCTGGCAAGT GGAGGGAAAT GCGGCGATTG GCAAGGCCGA ACACGCTACC
ACCTATGACG TGTTTGGCAA CCTGATAAGC GAAGTGCCCG CCACGGGCGT CGAGACGTTG
TATGAATATT ACCCCGCTGC AGGCGAGCTG GGCAGTTGCC CGGCAGACCC GCAGAACTTT
GTGCGCTGGC GCAAGAGCCA GACCATTAAC CCATCATCCG TAGGCGAGGC CGCAACCACG
CGCACGCAGT TCGTCTATAA AGCGCTCGAC CCGGTTCCGC TGCCCGACGG CACGCCCGAC
TATATTGCCA AACAGTGGCT CGTGGAAAAA GAACAGCATT TTTTTGAGCT GCAAGGTGAC
GCCAAGGTGC CGGTACCGCT GAGCCATTCG CTTACCGATT ACCATGAATC CACAGCGGAC
TTGTTGAGTT ATGGGCGGCC AAGCATCACG ACTTTCACCA TGGGCGACCA GGATACGACC
ACGTCGTACA CCTACACGAC AGAGGTCGTG GAACACCATC CAGCCTTGGT GACCACTCAA
GTGGTGACGG GCTTCGATCA TGGCCAAGCG CTGGAAGACG GCACCCTTCG CGATGTTCAG
AAAACTATCG TCCTGAAGCA CTCGGCATTG ATCGGTGAGC CATTGTTCAA CCGGGATGAC
AACGATGTGG AAATTGCCTA TGCCTATGAT CGACTGGCCC GTGTGATCAG TGAGACCGTT
GCACCCAACG ATCCCATTTA CAGGGCCTAT CGCACTTACA GCTATGTGCT GGCGGTTCTT
GACGAACCGG CTGTGCAGAC GTCGAGCGAT GTCAAGCGCG TAACGACCCG ATCGAAACTC
GATGGTTTGG GCCGTGTATT CGAAGAGGAG CGTATGGACG CCGATAGTGC CGAAGTATGG
CGACGCCAGG CGTATCGCAA GAGCTATTCG GCTGTTTACA ACGCTTACGG CCAACTTGAG
GAAGAAACCG AATACGACTG GATGGCGGAT GAGGTTTCCG AGCAGGGGGT TCACCGTCCA
GTCGACCTGC CGTTGACGGT GCGCTATGGC TACGATGACT GGGGCCAGCA GGCGTGGCAA
ATTGGGCCTG ATGCTATCCG CCACGTTGAA GAGACGAACC CGGTGGGTAA CCAGAACTCG
GCGTTTATGC CTATCAAGCG CAGTTGGCGG GAGTCAAAAG ATCGCGCTGA CGCAAGTGGC
GTGACCGAAA CTTGGTTCAA CCGGTTCGAT GAACCCACCC AGGTCAGGCG CTTCAAGTCC
AGGGACGATA CCGTTGCATA CAGCCAACAT ACCTATCATT ACGATGGCCT GGGGCGTGTG
GCCCGGGAAG TGGCGGCCGA TCAGTCCGTC ACGCTGAGTA CTTACGATCC CTTCGGCCGG
TTGCTGGAGC AGACCCTCCC CGACAGGTCG GTGGTAACCC GCCGCTATGC GGACTTCGAC
AGTGGCGACC TTCCGGCATA CATCGGTGTC AATGGCATCG AGCTGGGCAC ACAAACCTTC
GATGGCCTCA AGCGGCTATA CAAGTCTGAT ACGGGTGGGC GTAAGCGCAC TCTGTACTAT
AAACCTGGGC AAAACCGGCC GGAGAGGGTG TTTACGCCCT CCAAGCAATG GGTCGATTAC
GAATATAACC CCGTGTTGGG TGAAGAGCCG CTAAAGCGAG TATCCAGCCG GTTCACGGCT
GATTACCAGT ACGATTCGGA AAACGCCCGG CTGTTGAGCT GTACCGAAGA TGGGCAAACC
CTGGAAAGGG AGTATTTCAG TACCGGGCAG ATGAAGTTGG AGAGGCGCAA GGAGGGCGAC
GAAGTCTTTG AAATGCAGTA TGCATTCAGC TACCGCGAAC GCATGCTGAG CTACACCGAT
GTGCTGGGCC AGGTGCAAGA CTATGAGTAT GACGCGGCCG GGCGTTTGCT GCAGACCACG
CTGGGCTCGA CGGTAGCAAT GTTCGCGTAC GACACGCTGG GCAGAACGTC GGAAATCGCA
ACGCGTGATG GCGACAACTT CCTCATTACT CAGTTGGAAT ATGACGATTT CGATCGTGAG
ACGCTTCGCC GTTTCGATAT GAAGGGTGAG ATACAGACGT TGACCCAGCG GTACGATGAA
TGTGACCGCA TCGTGGTGAA AACCTTGTGG CCAGGGGAGC CGGGAGAAGA CCAGCGGCGA
CAAGCCGAGG TGTACGCTGA TCGTGTTCGG GGCAAGGTGT TTCAACCCGC CGCGTCTGCA
GATGTCAATG AGCGGTTGAA AAACATCTAC GCAAAGCACA AGCCCTTTAA TTCGGGAGCT
GGCGGTGTGC TGAACGGAGA AAACTGGCTC AGGAACGAGG TCTATGCGTA CGAGAGTCGC
GGTCGCTTGT ATGACTATAA ATGCAGTGGC GAATTGGCCC CAGTCGACCC GCAAGGGCAT
GTGATCCGTG GCCAGGCATT TGAGTTTGAT GCCCTGGACA ATATTGTGCT GGTTATCACC
GAACTGACAG ATAAAGACAC GGACGCGCCG GGTGAAAATG TGGCCGAGTA CTTCTTCGAA
TATGAAGACC CTGCGCAGCT CAGCAAAATA ACCAATAGCT ATGAAGGGTA TACAGCCGAG
CAGAGGTTGA CGTATGACGA TGACGGCAAC CTTGAAGACG ATGGTGAGGG CATGGAAATG
GAATATGACG CCACGGGTAG GCTGAGGTCA GTCGTCAAGG CGGGGGGGAC CTCGAACTAT
TACTATGATG GTGTTGATCG TTTGAGTGGG CAGAGTTGA
|
|---|
| Protein sequence | MSGKTALHSG AFNFLSFISN GVDPRTGQYG LSIALPVLRG DYLGGAEFPL KLSYNSMGAG
DFGYGQGWDI NLSSFIEDAY PAGGGALSLY TGERFTVDGV ESISEKKLDS FHFHKDGDGL
YRVEHKDSSL TEVLQPTNIG TKKLMLPKKL YADSRRYLEF VYRDNPQLPS TPCLSEVFDS
GVGGGRPARL LLIEYSGDMI ITLYPDQPDA RASYTLKFNG RRLERVVLPT NEQAYWEFSY
QQVHGQTCVS RVRTPTGAVE HIEYGVDGDP GHKLPGVEQY LPRVKRHSIV PGFGQPDTVT
EYDYSTTNFV GNGSSIVWNN NGRDNLYEVT DANYSYWSKT TERCPGQADR TVLSTYDRFH
RSVEVKQVQG QCVNTTVSQY PGNPAEPFIK QPANFQLASL STQTWQVEGN AAIGKAEHAT
TYDVFGNLIS EVPATGVETL YEYYPAAGEL GSCPADPQNF VRWRKSQTIN PSSVGEAATT
RTQFVYKALD PVPLPDGTPD YIAKQWLVEK EQHFFELQGD AKVPVPLSHS LTDYHESTAD
LLSYGRPSIT TFTMGDQDTT TSYTYTTEVV EHHPALVTTQ VVTGFDHGQA LEDGTLRDVQ
KTIVLKHSAL IGEPLFNRDD NDVEIAYAYD RLARVISETV APNDPIYRAY RTYSYVLAVL
DEPAVQTSSD VKRVTTRSKL DGLGRVFEEE RMDADSAEVW RRQAYRKSYS AVYNAYGQLE
EETEYDWMAD EVSEQGVHRP VDLPLTVRYG YDDWGQQAWQ IGPDAIRHVE ETNPVGNQNS
AFMPIKRSWR ESKDRADASG VTETWFNRFD EPTQVRRFKS RDDTVAYSQH TYHYDGLGRV
AREVAADQSV TLSTYDPFGR LLEQTLPDRS VVTRRYADFD SGDLPAYIGV NGIELGTQTF
DGLKRLYKSD TGGRKRTLYY KPGQNRPERV FTPSKQWVDY EYNPVLGEEP LKRVSSRFTA
DYQYDSENAR LLSCTEDGQT LEREYFSTGQ MKLERRKEGD EVFEMQYAFS YRERMLSYTD
VLGQVQDYEY DAAGRLLQTT LGSTVAMFAY DTLGRTSEIA TRDGDNFLIT QLEYDDFDRE
TLRRFDMKGE IQTLTQRYDE CDRIVVKTLW PGEPGEDQRR QAEVYADRVR GKVFQPAASA
DVNERLKNIY AKHKPFNSGA GGVLNGENWL RNEVYAYESR GRLYDYKCSG ELAPVDPQGH
VIRGQAFEFD ALDNIVLVIT ELTDKDTDAP GENVAEYFFE YEDPAQLSKI TNSYEGYTAE
QRLTYDDDGN LEDDGEGMEM EYDATGRLRS VVKAGGTSNY YYDGVDRLSG QS
|
|---|
| |