| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_1374 |
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| Symbol | |
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| ID | 5869138 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | + |
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| Start bp | 1536073 |
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| End bp | 1537191 |
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| Gene Length | 1119 bp |
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| Protein Length | 372 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 641546477 |
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| Product | NAD-dependent epimerase/dehydratase |
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| Protein accession | YP_001667617 |
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| Protein GI | 167032386 |
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| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0451] Nucleoside-diphosphate-sugar epimerases
[COG1898] dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 30 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 0.00506617 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAAGTAC TGGTCACAGG GGCAAATGGT TTCGTAGGGC GTAACCTGCT GGTGCACCTT
GGCGAGCGCA AGGACATCGA GGTCGTGCTT TTCACGCGGG AGCATGCCCT TGAGTCGCTA
GCCGAAAAGG TTCGAGATGT GGACTTCGTG TTCCATCTGG CGGGCATAAA CCGGCCAAAA
GACCCCGAGG AATTCAAGGT TGGCAATGCT GACCTGACCC TGGAGCTTTG CCGGGCCATC
AAGGCAAGTG GGCGGCAAAT TCCCGTCCTT TATACTTCGT CGAGCCAGGC TGAGCTGGAT
AACGCCTACG GTGCCAGCAA GCGCGGCGCC GAAGAGGCCC TGGCCGAGTT GCAAACGCAG
CATGGCTCGG CCGTGCACCT GTTCCGCCTA CCCAATGTGT TTGGCAAGTG GGCACGGCCG
AACTACAACT CGGCAGTGGC AACGTTCTGC CACAACATCG TGCATGGCCT GGACATCACC
ATCAACGACC CTCAGGCGCG TATCAACCTG GTCTACATCG ATGATGTAGT CAAAGCGTTC
GTCCAGGTGC TGGACGGTGT GAAGTCCGGT ACGCCGTTTG CGCAGGTAGA GCCGCAGTAC
AGCATCACCG TGGGTGAACT GGCAGACCTG TTACGCACCT TCCGCGATAG CCGTGCGAGC
ATGGTCACAG AAGCAGTGGG TACCGGTTTG GTGCGAGCCC TGTATTCGAC CTACTTGAGC
TATGTGCCCC CCGAGAGTTT CACCTATACG GTGCCCAAGC ATGGCGACCC GCGAGGCGTG
TTCGTCGAAA TGCTGAAAAC CAAGGACAGT GGCCAGTTTT CGTACTTCAC CGCGCACCCC
GGTATTACCC GTGGCGGCCA TTACCACCAT ACCAAGACCG AAAAGTTTTT GGTGATCAAG
GGCAAAGCGT GTTTCCGCTT CCGTCATGTG GTCTCAGGGG CGTTCCACGA ATTGTTCACC
TCTGGCGAAG AGCCGGAGAT TGTCGAGACT GTCCCAGGCT GGACCCACGA CATCACCAAC
GTAGGTGAGG ACGAAATGAT CGTCATGCTC TGGGCCAACG AAATTTTCGA CCGTGAGAAC
CCTGATACCT ACGCTCGGCC AGTAGGCACC GAAGCCTGA
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| Protein sequence | MKVLVTGANG FVGRNLLVHL GERKDIEVVL FTREHALESL AEKVRDVDFV FHLAGINRPK
DPEEFKVGNA DLTLELCRAI KASGRQIPVL YTSSSQAELD NAYGASKRGA EEALAELQTQ
HGSAVHLFRL PNVFGKWARP NYNSAVATFC HNIVHGLDIT INDPQARINL VYIDDVVKAF
VQVLDGVKSG TPFAQVEPQY SITVGELADL LRTFRDSRAS MVTEAVGTGL VRALYSTYLS
YVPPESFTYT VPKHGDPRGV FVEMLKTKDS GQFSYFTAHP GITRGGHYHH TKTEKFLVIK
GKACFRFRHV VSGAFHELFT SGEEPEIVET VPGWTHDITN VGEDEMIVML WANEIFDREN
PDTYARPVGT EA
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