| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_1093 |
|---|
| Symbol | |
|---|
| ID | 5868852 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | + |
|---|
| Start bp | 1240986 |
|---|
| End bp | 1242608 |
|---|
| Gene Length | 1623 bp |
|---|
| Protein Length | 540 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 641546192 |
|---|
| Product | methyl-accepting chemotaxis sensory transducer |
|---|
| Protein accession | YP_001667337 |
|---|
| Protein GI | 167032106 |
|---|
| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0840] Methyl-accepting chemotaxis protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.196472 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 36 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAAAAACT GGACCTTGCG CCAACGGATC CTGGCAAGTT TCGCCGTGAT CATCGCCATC
ATGCTGCTGA TGATCGTGGC CGCCTATTCG CGGTTGGTGA CCATCGAAAC CGCCGAAGAG
GCGGTAGGGA CCGACAGCAT TCCCGGGGTC TACTACAGCT CGATGATCCG CAGCGCCTGG
GTCGATAGCT ACGTCACCAG CCAGCAACTG GTGGGCCTGT CCAACCACCG TGAAATCACT
TCGGCCGACA TGGAGCTGTT CAAAAGCTTC GAAGACCGGC TCAAGCAACA CATGGCCAGC
TACCAGGCCA CCATCCAGGA CAAGGATGAT CAAACCCGCT TCGACAACTT CGTGCAGTTG
GAAGAGGGCT ACCTGAAGAT CGTCAACCAG GTGCTGGATA CTTACCGCCA GCACAACTAC
GCCGAAGCCG AACGGCTGAT CATCGAAGTG CTGACCCCGG CCTGGGTAGA TGGGCGCAAG
CACTTGAATG AAGTGATCGA GAACAACCGG GCATCAGCCG ACGCCGCCAC CAACGAGATC
GTCAGCGCCG TGAGCACGGC CAAGGGCAGC ATGGTCGTTT CGCTGCTGCT GGCAATCGTT
GCCGCTGGCA TCTGCGGCTT GCTGCTGATG CGCGCCATCA CCGCGCCCAT GCAACGTATC
GTGCATGCCC TCGACAAGCT GCGCTCGGGC GACCTGAGCA TGCGCCTGAG CCTGGACCGC
AAGGACGAGT TCGGTGCCAT CGAAAGCGGT TTCAACGAGA TGGCCGAAGC ACTGGCCAAC
CTGGTAGCCC AGGCGCAACG TTCGTCGGTG CAGGTGACCA CCTCGGTTAC CGAAATTGCC
GCCACGTCCA AGCAACAGCA GGCCACCGCC ACCGAAACGG CCGCCACCAC CACCGAAATC
GGCGCCACCT CGCGAGAAAT CGCCGCCACT TCGCGCGACC TGGTGCGCAC CATGACCGAA
GTGACGACCG CCGCTGACCA GGCCTCCAGC CTGGCAGGCT CCGGGCAGCA GGGCCTGGCG
CGCATGGAAG AGACCATGCA CCAGGTGATG GGCGCAGCCG ATCTGGTCAA CGCCAAGCTT
GGCATCCTCA ACGAGAAAGC CAGCAACATC ACGCAGATGG TGGTCACCAT CGTCAAGGTT
GCCGACCAGA CCAACCTGCT GTCGCTCAAC GCCGCCATCG AGGCAGAAAA GGCCGGCGAA
TATGGCCGCG GCTTTGCCGT GGTCGCCACC GAAGTGCGCC GCCTGGCCGA CCAGACCGCC
GTCGCCACCT ACGACATCGA GCAGATGGTG CGCGAGATCC AGTCGGCCGT GTCGGCTGGG
GTCATGGGCA TGGACAAGTT CTCCGAAGAA GTGCGCCGCG GCATGTTCGA AGTACAACAG
GTGGGCGAGC AGCTCAGCCA GATCATCCAC CAGGTGCAGG CCCTGGCACC GCGCGTGCTG
ATGGTCAACG AAGGCATGCA GGCCCAGGCC ACCGGTGCCG AGCAGATCAA CCAGGCGCTG
GCCCAGCTCA GCGATGCCAG CACCCAGACC GTCGAGTCGC TGCGCCAGGC CAGTTTTGCC
ATCGATGAGC TAAGCCAGGT GGCCGCGGGC CTGCGTGGCG GCGTGTCGCG CTTCAAAGTC
TGA
|
|---|
| Protein sequence | MKNWTLRQRI LASFAVIIAI MLLMIVAAYS RLVTIETAEE AVGTDSIPGV YYSSMIRSAW
VDSYVTSQQL VGLSNHREIT SADMELFKSF EDRLKQHMAS YQATIQDKDD QTRFDNFVQL
EEGYLKIVNQ VLDTYRQHNY AEAERLIIEV LTPAWVDGRK HLNEVIENNR ASADAATNEI
VSAVSTAKGS MVVSLLLAIV AAGICGLLLM RAITAPMQRI VHALDKLRSG DLSMRLSLDR
KDEFGAIESG FNEMAEALAN LVAQAQRSSV QVTTSVTEIA ATSKQQQATA TETAATTTEI
GATSREIAAT SRDLVRTMTE VTTAADQASS LAGSGQQGLA RMEETMHQVM GAADLVNAKL
GILNEKASNI TQMVVTIVKV ADQTNLLSLN AAIEAEKAGE YGRGFAVVAT EVRRLADQTA
VATYDIEQMV REIQSAVSAG VMGMDKFSEE VRRGMFEVQQ VGEQLSQIIH QVQALAPRVL
MVNEGMQAQA TGAEQINQAL AQLSDASTQT VESLRQASFA IDELSQVAAG LRGGVSRFKV
|
|---|
| |