| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_0926 |
|---|
| Symbol | |
|---|
| ID | 5868686 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | - |
|---|
| Start bp | 1062205 |
|---|
| End bp | 1063584 |
|---|
| Gene Length | 1380 bp |
|---|
| Protein Length | 459 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 641546027 |
|---|
| Product | outer membrane porin |
|---|
| Protein accession | YP_001667172 |
|---|
| Protein GI | 167031941 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 35 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 42 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGAGAATAT TCACCCTGAC CGCACTGGCG TTATCCATCA GTGCCTTATC CACCGTGGCC
CAGGCCGACC CGCAAAGCCA GGCCTACATC CCGCTCACCC TCAAAGGCAG CAGCGAGCAG
GCGCAGGCCA GCGGCTTCAT CGACGGCCAG AGCCTGTCTG GCAGCACCCG CAACTGGTAC
GCCCGCGAAC GCGCCGCACG CGCCCCGCTG TGGAAGTACT ACAAAAGCGA CGGCACCCGC
CACCCCACCC ACAGCCGGGA AAACTGGGTA CAAGGCAGCA TCCTCAACTA CAGCTCCGGC
TTCACCCAAG GCACCGTGGG CATCGCCGTC GAGGCCGCTG GCTACAACGC CATCGCCCTG
CAACAGAGCC GCGAAGCTGT CGCCGGCCCC AACAACCGCA CCCTGACCCA CAGCGATGGC
GACCCCATTG GCCAGTGGAG CAAACTGGGC CTGGGCAACA TCAAGGCACG GGTGTCCAAC
ACTACCCTTA CCCTCGGCCG CCAGTCGGTT GACACCCCGA TGATCGCCTA CATCGGCAAC
CGTGCCCTGC CGTCGAGCTT CCAGGGCGCG TTCCTGCACA GCGCCGAGTT CGATAACCTC
AGCTTCGACC TGGGCACCTT CGACCGCGTC TCGCCACGTA CCGAGCAGAG CCTCAGCAAG
TTCCGCAGCG AATACAGCGC CACTGGCGTG GAAACCGACC GCGCCAGCAC CGCCGGCATC
AACTACCAGC CGTTCAAGAG CCTGAGCACC AGCCTGTACG CCACCAAGGT CGACGATTTC
TGGAACCAGT ACTACTTCGG CGCCAACCAC GTGCTCGGCG ACAGCGCAGT GCTCAGCCTG
AGCACCGGCC TGAACTACTA CAAGACCGTC GACGCCGGCA GCCAGAAAAT GGGCAAGATC
GACAACGACA CCTACAGCCT GTCGTTCGAC CTGACCCACC AGGCCCACAC CCTCGGTGCC
TCCTGGCAGC AGGTCAACGG TAACGAGTAC TTCGACTACC TGCACGAAAC CAACGGCATC
TACCTGGCCA ACTCACTGCT GTCGGACTTC AACGGCCCCA ACGAAAAATC GCTGAAGATC
TCCTACGTAC TGAACATGGC GCCCTACGGT GTACCAGGCC TGAAGTTCAA CCTGTACAAC
GCCCGCGGCT GGGGCATCGA TGGCACTCAC TATCGCGGTA CAGCCTACGA CGTGAATGGC
CTGGATGGCG AAACCCACTA CGAGTGGGGG ATCGGCACCA GTTACGCGGT GCAGAGCGGG
CCGCTGAAAG ACACCAGCAT CCGCGCCACC TACACCACCC ACCGCGCCAG CAAGGCCCAG
GGTGATGGCA GCCTGGATGA GTTCCGCGTG GTGACCACCA TCCCATTCAA CATTCTCTGA
|
|---|
| Protein sequence | MRIFTLTALA LSISALSTVA QADPQSQAYI PLTLKGSSEQ AQASGFIDGQ SLSGSTRNWY
ARERAARAPL WKYYKSDGTR HPTHSRENWV QGSILNYSSG FTQGTVGIAV EAAGYNAIAL
QQSREAVAGP NNRTLTHSDG DPIGQWSKLG LGNIKARVSN TTLTLGRQSV DTPMIAYIGN
RALPSSFQGA FLHSAEFDNL SFDLGTFDRV SPRTEQSLSK FRSEYSATGV ETDRASTAGI
NYQPFKSLST SLYATKVDDF WNQYYFGANH VLGDSAVLSL STGLNYYKTV DAGSQKMGKI
DNDTYSLSFD LTHQAHTLGA SWQQVNGNEY FDYLHETNGI YLANSLLSDF NGPNEKSLKI
SYVLNMAPYG VPGLKFNLYN ARGWGIDGTH YRGTAYDVNG LDGETHYEWG IGTSYAVQSG
PLKDTSIRAT YTTHRASKAQ GDGSLDEFRV VTTIPFNIL
|
|---|
| |