| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_0860 |
|---|
| Symbol | |
|---|
| ID | 5868619 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | + |
|---|
| Start bp | 991810 |
|---|
| End bp | 994335 |
|---|
| Gene Length | 2526 bp |
|---|
| Protein Length | 841 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 641545960 |
|---|
| Product | TonB-dependent siderophore receptor |
|---|
| Protein accession | YP_001667106 |
|---|
| Protein GI | 167031875 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG4773] Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid |
|---|
| TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 44 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGCCGAT TTCCTGGCCA CCCCGTCCTC AGCCCGCTAG CCCTGGCCTT GCGCCTGTCC
TGCGCCGGGC TGGTCTTCTC CGTTGCGGCC TTGCCGGCCG TGGCCGAGGA GGCCGCCCGC
CGTAGCTTCG ATGTGCCTGC CGGCAACCTG GCCGAGGCCC TTGGCAGCTA TGCCCAGCAA
GCCGCCGTGT CGCTGGCCTT CACCCCCGAA GCGCTGGCCG GTTTGCAAAG CAATGGCCTG
CATGGCCTGT ATTCGGTGGA CAGCGGTTTT GCCGTGCTGC TGGCTGGCAG CGGCTACCGG
GTGGCACGCA GCGACAACGG CTACCGGCTG GTGGCAGAGC CGCTGGTGGC CGTGAGTGGT
GACGCGCTGG AACTGGGCGT GACCACCGTG GCCGGGCAGG GCATGGGCGA GAGTACCGAG
AACACCGGCT CGTATGCGCC AGGCTTGATC AGCGTCGGCT CCAAGAGCCC CACCAGCCTG
CGCCAGACGC CGCAATCGGT GTCGACGGTG ACCCGCCAAC TGATCGAAGA CCAGCAACTG
ACCGACATCA ACCAGGCGAT GAAAGTAACG CCGGGCATCG TCACCCAGAG CACCACCTTC
CGTACCCAGG ACTTCCTTTC ACGCGGTTTC AGCATCCAGA ACCTGCAGAT CGACGGCGCT
GCGCCGCAGG CGTTGGGCAC CGCCATGGGC TCGTTCTACT CGTCGAACAT CTTCGAGTTG
GCCGAGTTCG ACCACATCGA AGTGCTGCGA GGTACCGCTG CACTGTATGG CGGCTCGGGT
GACCCGGGCG GCATCATCAA CATGGTGCGC AAGCGGCCCA CCGTCTACAA CCAGCTCAAG
CTGACCCTGT CGGCCGGCAG TTGGGACAAC TATCGCCAGG AGTTCGACCT GTCCGGCCCG
CTGGGCTGGG ATGGCCGCCT ACGTGGGCGC TTGGTGATGT CCAATACCGA CCGACAGTAC
TTCACCGACA ACCGCGCCAC CGAGCGGCCG CTGGTGTATG GCGTGCTTGA GGCGGACGTT
ACCGACGACA CCATGCTTAC CTTCGGCGCC CGTTACAACA AGTCCCACGA AACCGGCAGC
AACAGCGCGG TGCCGCGCTA TAGCAACGGT GCTGATCTGA ACCTGCCGCG GCACACTGGC
CTGACCAAGA ACTGGGCCTA CCTGGATGCC ACCGCGCGCG AGTACTTCGC CAAGGTAGAC
CACCGCTTCA ACGACGATTG GAAGCTCAAT CTCAGTTACA CCAACACTTG GGACCTCGGG
CTGTTCAAGA CCGCCACCAC CCTGAACGCG GTGGACCCGG TGACCAATAC CGGCGCGACC
TGGTACGGCA CGTCGACCCG CCAGGAGAAC GAGCAGCACC TGTACGACGC TAACGTGTCC
GGGCACTTCC AGGCCTTTGG CCTGGACCAC GAAGTGGTTT TCGGGGCCGA CTACCAGAAG
ATCGACAGCC GTTGGCTGGG CACCGCCCCC TACGCTGCAT CGGGCTCGCC GGCCAACGTG
TTCGACCCCG ACAGCTCGGC GTTCGACGAC CCTGGCAACG GGCGTGACTA CAAACGTGAC
TACAGCCCCA ATTCGCAACG CCAGTATGGT TTGTATGGCA GCCTGCGCCT GCAACTGGCC
GAGCCGCTGC ACCTGATCGT CGGGGCGCGT GCCCAGCGCT TCCACTTCTG GCAGACCTAC
ACCAATGCCT TGACCACTAA TGTGTCCAGG ACCAGCCCCG AGCAGCGCAT TGGCACCAAG
GTCACGCCGT TCGGTGGCCT GGTGTACGAC CTGGACGATC AATGGTCGGC CTATGCCAGC
TATTCGGAGA TCTACCGGCC GCAGTCCAGC AAGATCAGCG GCCCCGCCGA AACCGGTACG
GCGCTTGAGC CTATGACCGG AAAAACCTAC GAGACCGGCC TAAAGGGCGA GTTGTTCAAT
GGTGCGCTCA ATGCCAGCGT GGCGCTGTAC TACACCACCC GCGAAAACGA AGCGGTCCAG
GACCCGAACT TCCCGGCGAG TTTCGCCGGC TTCTCCGGTA GCTGCTGCTA TGTGCCCAAC
GGCAAGGTCG TGAGCAAGGG CATCGACATG GAGCTGTCCG GCGAGCTGTT GCCTGACTGG
ATGCTGGTGG GTGGCTACAC CTTCAACCTC AACCGTAACC GCAGCTCCGA CGCCCCGCTG
AGCACGGTAA TGCCCAAGCA CCTGTTCAAG CTGTACACCA CTTACCGCCT ACCGGGCCTC
TTCAGCGACT TCAAAGTGGG TGGAGGTGTG CAGGTGCAAA GCGCTACCTA CGCCACTGGT
GAAGTCAACC GCTACGACAG CAGCGGCAAG CTGGTGCAAC AGAATGTGCC CTTCGATTTC
GACCAGAGCG GCTACGCCAT CTGGAACGCC CTGGTCGAAT ACCGTGTCGA CGACCATTGG
AACGTCACGC TCAACGGCAA CAACCTGTTC GACAAGAAGT ACTACGAAAC CGTGGGTACT
TCGACCTACG GTAATTACTA TGGCGAGCCA CGCAACTTCA TGGTGACCCT GCGCGGCACT
TATTGA
|
|---|
| Protein sequence | MRRFPGHPVL SPLALALRLS CAGLVFSVAA LPAVAEEAAR RSFDVPAGNL AEALGSYAQQ
AAVSLAFTPE ALAGLQSNGL HGLYSVDSGF AVLLAGSGYR VARSDNGYRL VAEPLVAVSG
DALELGVTTV AGQGMGESTE NTGSYAPGLI SVGSKSPTSL RQTPQSVSTV TRQLIEDQQL
TDINQAMKVT PGIVTQSTTF RTQDFLSRGF SIQNLQIDGA APQALGTAMG SFYSSNIFEL
AEFDHIEVLR GTAALYGGSG DPGGIINMVR KRPTVYNQLK LTLSAGSWDN YRQEFDLSGP
LGWDGRLRGR LVMSNTDRQY FTDNRATERP LVYGVLEADV TDDTMLTFGA RYNKSHETGS
NSAVPRYSNG ADLNLPRHTG LTKNWAYLDA TAREYFAKVD HRFNDDWKLN LSYTNTWDLG
LFKTATTLNA VDPVTNTGAT WYGTSTRQEN EQHLYDANVS GHFQAFGLDH EVVFGADYQK
IDSRWLGTAP YAASGSPANV FDPDSSAFDD PGNGRDYKRD YSPNSQRQYG LYGSLRLQLA
EPLHLIVGAR AQRFHFWQTY TNALTTNVSR TSPEQRIGTK VTPFGGLVYD LDDQWSAYAS
YSEIYRPQSS KISGPAETGT ALEPMTGKTY ETGLKGELFN GALNASVALY YTTRENEAVQ
DPNFPASFAG FSGSCCYVPN GKVVSKGIDM ELSGELLPDW MLVGGYTFNL NRNRSSDAPL
STVMPKHLFK LYTTYRLPGL FSDFKVGGGV QVQSATYATG EVNRYDSSGK LVQQNVPFDF
DQSGYAIWNA LVEYRVDDHW NVTLNGNNLF DKKYYETVGT STYGNYYGEP RNFMVTLRGT
Y
|
|---|
| |