| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_0399 |
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| Symbol | |
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| ID | 5868137 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | + |
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| Start bp | 464825 |
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| End bp | 466108 |
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| Gene Length | 1284 bp |
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| Protein Length | 427 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 641545479 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_001666646 |
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| Protein GI | 167031415 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 33 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 0.545966 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGTTTCGTC TTAACGCTGT TCGCGCAAGC CACTTCCTGC CTTCGCTGTT CCTGTTGCTG
GCAGGGCTCG CCGCAGCCTA TGTGAGAGAC CTCAGCGTCT TTTTCACATC GCTGTTCAAT
GTCTTGCCTA CCTTGGTTCT GCTGCTGGGC GGCGCCTACT GCGCGGTGTA CCGCCGCCAG
CGTGAGCTGT TCATGATGCT TACGGTGTAC ATCGCCTACT TCCTGCTCGA CACCCAGACC
GACTTCTACC GTGACCATGG CCGCGTGCGC GAGGACGCAG CGGTAATCTT CCACCTGGTG
TGCCTGCTGC TGCCGGCGCT GTTCGGGCTG TATGGCGCCT GGCAGGAACG CACTCACCTG
CTGCAGGACC TGGTGGCCCG CGGTGCCGTG CTGTTTGCCG TGGGCAGCGT GGCAGTAGCC
CTGGAGCAAA GTTACCCCGA GGCGTTGCTG ACCTGGTTGG CTGAAATTCG CTGGCCGGCC
TTGCATGGCC AGTGGATGAG CCTGATTCAG ATGGTATACC CCTTGTTCAT CGGCGTGTTC
ATCCTGCTGG TGGTGCAATA CCTGCGCGCA CCGCGGCCGC TGCACGCCGC GTTGATAACG
GGCCTGCTGG GCATTTTCTG GATGCTGCCG CAAACCTTCA TCCTGCCGTT TACCCTGAAC
ATCATGTGCA GCCAGGTGAT GCTGATGATC GCCGCAGCCG TGGCGCACGA GGCTTATCAG
ATGGCTTTTC GCGATGAGCT GACCGGCCTG CCGGGGCGTC GTGCGCTGAA CGAACGCATG
CAGCGCCTGG GGCGCAACTA TGTGATCGCC ATGACCGATG TCGACCACTT CAAGAAATTC
AACGACACCC ACGGCCACGA TGTGGGCGAC CAGGTGCTGC GCCTGGTCGC CAGCCGCTTG
TCCAAGGTCA CCGGCGGTGG TCGCGCCTAC CGTTATGGTG GCGAGGAGTT CGCCCTGGTC
TTCGCTGGCA AGACCGCCGA AGAATGCGTA CCGCATGTGG AAGCCGTGCG TGAAGTCATC
GCCAACTACG TGATGCATCT GCGCGACCAG CATAACCGCC CGCAGGACGA TACGGCCGGG
CGTCAGCGCC GCGCTGGCAG TGGCGGCGGC ACGGTCTCGG TCACCATCAG TATTGGCGTG
GCCGAGCGCC ATGCCGATCA TCGCAACCCC GAGGCGGTGC TCAAATCCGC CGACCAGGCG
CTATACAGCG CCAAAGGTGC GGGGCGCAAT TGTGTCATGG TGCATGGGCA ACAATCGCAG
CGTGGGGCCG TGCGGACGGC GTGA
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| Protein sequence | MFRLNAVRAS HFLPSLFLLL AGLAAAYVRD LSVFFTSLFN VLPTLVLLLG GAYCAVYRRQ
RELFMMLTVY IAYFLLDTQT DFYRDHGRVR EDAAVIFHLV CLLLPALFGL YGAWQERTHL
LQDLVARGAV LFAVGSVAVA LEQSYPEALL TWLAEIRWPA LHGQWMSLIQ MVYPLFIGVF
ILLVVQYLRA PRPLHAALIT GLLGIFWMLP QTFILPFTLN IMCSQVMLMI AAAVAHEAYQ
MAFRDELTGL PGRRALNERM QRLGRNYVIA MTDVDHFKKF NDTHGHDVGD QVLRLVASRL
SKVTGGGRAY RYGGEEFALV FAGKTAEECV PHVEAVREVI ANYVMHLRDQ HNRPQDDTAG
RQRRAGSGGG TVSVTISIGV AERHADHRNP EAVLKSADQA LYSAKGAGRN CVMVHGQQSQ
RGAVRTA
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